اشترك بالحزمة الذهبية واحصل على وصول غير محدود شمرا أكاديميا
تسجيل مستخدم جديدSegmentation of laterally symmetric overlapping objects: application to images of collective animal behaviour
82
0
0.0
(
0
)
اسأل ChatGPT حول البحث
ﻻ يوجد ملخص باللغة العربية
Video analysis is currently the main non-intrusive method for the study of collective behavior. However, 3D-to-2D projection leads to overlapping of observed objects. The situation is further complicated by the absence of stall shapes for the majority of living objects. Fortunately, living objects often possess a certain symmetry which was used as a basis for morphological fingerprinting. This technique allowed us to record forms of symmetrical objects in a pose-invariant way. When combined with image skeletonization, this gives a robust, nonlinear, optimization-free, and fast method for detection of overlapping objects, even without any rigid pattern. This novel method was verified on fish (European bass, Dicentrarchus labrax, and tiger barbs, Puntius tetrazona) swimming in a reasonably small tank, which forced them to exhibit a large variety of shapes. Compared with manual detection, the correct number of objects was determined for up to almost $90 %$ of overlaps, and the mean Dice-Sorensen coefficient was around $0.83$. This implies that this method is feasible in real-life applications such as toxicity testing.
قيم البحث
اقرأ أيضاً
Understanding and even defining what constitutes animal interactions remains a challenging problem. Correlational tools may be inappropriate for detecting communication between a set of many agents exhibiting nonlinear behavior. A different approach
is to define coordinated motions in terms of an information theoretic channel of direct causal information flow. In this work, we consider time series data obtained by an experimental protocol of optical tracking of the insect species Chironomus riparius. The data constitute reconstructed 3-D spatial trajectories of the insects flight trajectories and kinematics. We present an application of the optimal causation entropy (oCSE) principle to identify direct causal relationships or information channels among the insects. The collection of channels inferred by oCSE describes a network of information flow within the swarm. We find that information channels with a long spatial range are more common than expected under the assumption that causal information flows should be spatially localized. The tools developed herein are general and applicable to the inference and study of intercommunication networks in a wide variety of natural settings.
Numerical models indicate that collective animal behaviour may emerge from simple local rules of interaction among the individuals. However, very little is known about the nature of such interaction, so that models and theories mostly rely on apriori
stic assumptions. By reconstructing the three-dimensional position of individual birds in airborne flocks of few thousands members, we prove that the interaction does not depend on the metric distance, as most current models and theories assume, but rather on the topological distance. In fact, we discover that each bird interacts on average with a fixed number of neighbours (six-seven), rather than with all neighbours within a fixed metric distance. We argue that a topological interaction is indispensable to maintain flocks cohesion against the large density changes caused by external perturbations, typically predation. We support this hypothesis by numerical simulations, showing that a topological interaction grants significantly higher cohesion of the aggregation compared to a standard metric one.
In this paper, we identify a radically new viewpoint on the collective behaviour of groups of intelligent agents. We first develop a highly general abstract model for the possible future lives that these agents may encounter as a result of their deci
sions. In the context of these possible futures, we show that the causal entropic principle, whereby agents follow behavioural rules that maximise their entropy over all paths through the future, predicts many of the observed features of social interactions between individuals in both human and animal groups. Our results indicate that agents are often able to maximise their future path entropy by remaining cohesive as a group, and that this cohesion leads to collectively intelligent outcomes that depend strongly on the distribution of the number of future paths that are possible. We derive social interaction rules that are consistent with maximum-entropy group behaviour for both discrete and continuous decision spaces. Our analysis further predicts that social interactions are likely to be fundamentally based on Webers law of response to proportional stimuli, supporting many studies that find a neurological basis for this stimulus-response mechanism, and providing a novel basis for the common assumption of linearly additive social forces in simulation studies of collective behaviour.
Instance segmentation of overlapping objects in biomedical images remains a largely unsolved problem. We take up this challenge and present MultiStar, an extension to the popular instance segmentation method StarDist. The key novelty of our method is
that we identify pixels at which objects overlap and use this information to improve proposal sampling and to avoid suppressing proposals of truly overlapping objects. This allows us to apply the ideas of StarDist to images with overlapping objects, while incurring only a small overhead compared to the established method. MultiStar shows promising results on two datasets and has the advantage of using a simple and easy to train network architecture.
Spatial memory plays a role in the way animals perceive their environments, resulting in memory-informed movement patterns that are observable to ecologists. Developing mathematical techniques to understand how animals use memory in their environment
s allows for an increased understanding of animal cognition. Here we describe a model that accounts for the memory of seasonal or ephemeral qualities of an animals environment. The model captures multiple behaviors at once by allowing for resource selection in the present time as well as long-distance navigations to previously visited locations within an animals home range. We performed a set of analyses on simulated data to test our model, determining that it can provide informative results from as little as one year of discrete-time location data. We also show that the accuracy of model selection and parameter estimation increases with more location data. This model has potential to identify cognitive mechanisms for memory in a variety of ecological systems where periodic or seasonal revisitation patterns within a home range may take place.
سجل دخول لتتمكن من نشر تعليقات
التعليقات
جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
