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Persistent homology is a vital tool for topological data analysis. Previous work has developed some statistical estimators for characteristics of collections of persistence diagrams. However, tools that provide statistical inference for observations that are persistence diagrams are limited. Specifically, there is a need for tests that can assess the strength of evidence against a claim that two samples arise from the same population or process. We propose the use of randomization-style null hypothesis significance tests (NHST) for these situations. The test is based on a loss function that comprises pairwise distances between the elements of each sample and all the elements in the other sample. We use this method to analyze a range of simulated and experimental data. Through these examples we experimentally explore the power of the p-values. Our results show that the randomization-style NHST based on pairwise distances can distinguish between samples from different processes, which suggests that its use for hypothesis tests upon persistence diagrams is reasonable. We demonstrate its application on a real dataset of fMRI data of patients with ADHD.
In this chapter, we discuss applications of topological data analysis (TDA) to spatial systems. We briefly review the recently proposed level-set construction of filtered simplicial complexes, and we then examine persistent homology in two cases stud
We describe the utility of point processes and failure rates and the most common point process for modeling failure rates, the Poisson point process. Next, we describe the uniformly most powerful test for comparing the rates of two Poisson point proc
Topological Data Analysis is a recent and fast growing field providing a set of new topological and geometric tools to infer relevant features for possibly complex data. This paper is a brief introduction, through a few selected topics, to basic fund
This paper introduces a simple yet powerful approach based on topological data analysis (TDA) for detecting the true steps in a piecewise constant (PWC) signal. The signal is a two-state square wave with randomly varying in-between-pulse spacing, and
Making binary decisions is a common data analytical task in scientific research and industrial applications. In data sciences, there are two related but distinct strategies: hypothesis testing and binary classification. In practice, how to choose bet