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We propose a Ginzburg-Landau model for the expansion of a dodecahedral viral capsid during infection or maturation. The capsid is described as a dodecahedron whose faces, meant to model rigid capsomers, are free to move independent of each other, and has therefore twelve degrees of freedom. We assume that the energy of the system is a function of the twelve variables with icosahedral symmetry. Using techniques of the theory of invariants, we expand the energy as the sum of invariant polynomials up to fourth order, and classify its minima in dependence of the coefficients of the Ginzburg-Landau expansion. Possible conformational changes of the capsid correspond to symmetry breaking of the equilibrium closed form. The results suggest that the only generic transition from the closed state leads to icosahedral expanded form. Our approach does not allow to study the expansion pathway, which is likely to be non-icosahedral.
Multiple-spiral-wave solutions of the general cubic complex Ginzburg-Landau equation in bounded domains are considered. We investigate the effect of the boundaries on spiral motion under homogeneous Neumann boundary conditions, for small values of th
This paper develops a method to carry out the large-$N$ asymptotic analysis of a class of $N$-dimensional integrals arising in the context of the so-called quantum separation of variables method. We push further ideas developed in the context of rand
We discuss a basis set developed to calculate perturbation coefficients in an expansion of the general N-body problem. This basis has two advantages. First, the basis is complete order-by-order for the perturbation series. Second, the number of indep
Using the Griffiths-Simon construction of the $varphi^4$ model and the lace expansion for the Ising model, we prove that, if the strength $lambdage0$ of nonlinearity is sufficiently small for a large class of short-range models in dimensions $d>4$, t
We present a short review of our studies of disorder influence upon Ginzburg - Landau expansion coefficients in Anderson - Hubbard model with attraction in the framework of the generalized DMFT+$Sigma$ approximation. A wide range of attractive potent