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82 - Hong Y. Ling , Ben Kain 2020
Dynamical instability is an inherent feature of bosonic systems described by the Bogoliubov de Geenes (BdG) Hamiltonian. Since it causes the BdG system to collapse, it is generally thought that it should be avoided. Recently, there has been much effo rt to harness this instability for the benefit of creating a topological amplifier with stable bulk bands but unstable edge modes which can be populated at an exponentially fast rate. We present a theorem for determining the stability of states with energies sufficiently away from zero, in terms of an unconventional commutator between the number conserving part and number nonconserving part of the BdG Hamiltonian. We apply the theorem to a generalization of a model from Galilo et al. [Phys. Rev. Lett, 115, 245302(2015)] for creating a topological amplifier in an interacting spin-1 atom system in a honeycomb lattice through a quench process. We use this model to illustrate how the vanishing of the unconventional commutator selects the symmetries for a system so that its bulk states are stable against (weak) pairing interactions. We find that as long as time reversal symmetry is preserved, our system can act like a topological amplifier, even in the presence of an onsite staggered potential which breaks the inversion symmetry.
Propensity score matching (PSM) has been widely used to mitigate confounding in observational studies, although complications arise when the covariates used to estimate the PS are only partially observed. Multiple imputation (MI) is a potential solut ion for handling missing covariates in the estimation of the PS. Unfortunately, it is not clear how to best apply MI strategies in the context of PSM. We conducted a simulation study to compare the performances of popular non-MI missing data methods and various MI-based strategies under different missing data mechanisms (MDMs). We found that commonly applied missing data methods resulted in biased and inefficient estimates, and we observed large variation in performance across MI-based strategies. Based on our findings, we recommend 1) deriving the PS after applying MI (referred to as MI-derPassive); 2) conducting PSM within each imputed data set followed by averaging the treatment effects to arrive at one summarized finding (INT-within) for mild MDMs and averaging the PSs across multiply imputed datasets before obtaining one treatment effect using PSM (INT-across) for more complex MDMs; 3) a bootstrapped-based variance to account for uncertainty of PS estimation, matching, and imputation; and 4) inclusion of key auxiliary variables in the imputation model.
Objectives: Most cancer data sources lack information on metastatic recurrence. Electronic medical records (EMRs) and population-based cancer registries contain complementary information on cancer treatment and outcomes, yet are rarely used synergist ically. To enable detection of metastatic breast cancer (MBC), we applied a semi-supervised machine learning framework to linked EMR-California Cancer Registry (CCR) data. Materials and Methods: We studied 11,459 female patients treated at Stanford Health Care who received an incident breast cancer diagnosis from 2000-2014. The dataset consisted of structured data and unstructured free-text clinical notes from EMR, linked to CCR, a component of the Surveillance, Epidemiology and End Results (SEER) database. We extracted information on metastatic disease from patient notes to infer a class label and then trained a regularized logistic regression model for MBC classification. We evaluated model performance on a gold standard set of set of 146 patients. Results: There are 495 patients with de novo stage IV MBC, 1,374 patients initially diagnosed with Stage 0-III disease had recurrent MBC, and 9,590 had no evidence of metastatis. The median follow-up time is 96.3 months (mean 97.8, standard deviation 46.7). The best-performing model incorporated both EMR and CCR features. The area under the receiver-operating characteristic curve=0.925 [95% confidence interval: 0.880-0.969], sensitivity=0.861, specificity=0.878 and overall accuracy=0.870. Discussion and Conclusion: A framework for MBC case detection combining EMR and CCR data achieved good sensitivity, specificity and discrimination without requiring expert-labeled examples. This approach enables population-based research on how patients die from cancer and may identify novel predictors of cancer recurrence.
56 - Ben Kain , Hong Y. Ling 2018
Grusdt et al. [New J. Phys. 19, 103035 (2017)] recently made a renormalization group study of a one-dimensional Bose polaron in cold atoms. Their study went beyond the usual Frohlich description, which includes only single-phonon processes, by includ ing two-phonon processes in which two phonons are simultaneously absorbed or emitted during impurity scattering [Shchadilova et al. Phys. Rev. Lett. 117, 113002 (2016)]. We study this same beyond-Frohlich model, but in the static impurity limit where the ground state is described by a multimode squeezed state instead of the multimode coherent state in the static Frohlich model. We solve the system exactly by applying the generalized Bogoliubov transformation, an approach that can be straightforwardly adapted to higher dimensions. Using our exact solution, we obtain a polaron energy free of infrared divergences and construct analytically the polaron phase diagram. We find that the repulsive polaron is stable on the positive side of the impurity-boson interaction but is always thermodynamically unstable on the negative side of the impurity-boson interaction, featuring a bound state, whose binding energy we obtain analytically. We find that the attractive polaron is always dynamically unstable, featuring a pair of imaginary energies which we obtain analytically. We expect the multimode squeezed state to help with studies that go not only beyond the Frohlich paradigm but also beyond Bogoliubov theory, just as the multimode coherent state has helped with the study of Frohlich polarons.
The two-phase mixing layer formed between parallel gas and liquid streams is an important fundamental problem in turbulent multiphase flows. The problem is relevant to many industrial applications and natural phenomena, such as air-blast atomizers in fuel injection systems and breaking waves in the ocean. The velocity difference between the gas and liquid streams triggers an interfacial instability which can be convective or absolute depending on the stream properties and injection parameters. In the present study, a direct numerical simulation of a two-phase gas-liquid mixing layer that lie in the absolute instability regime is conducted. A dominant frequency is observed in the simulation and the numerical result agrees well with the prediction from viscous stability theory. As the interfacial wave plays a critical role in turbulence transition and development, the temporal evolution of turbulent fluctuations (such as the enstrophy) also exhibits a similar frequency. In order to investigate the statistical response of the multiphase turbulence flow, the simulation has been run for a long physical time so that time-averaging can be performed to yield the statistically converged results for Reynolds stresses and the turbulent kinetic energy (TKE) budget. An extensive mesh refinement study using from 8 million to about 4 billions cells has been carried out. The turbulent dissipation is shown to be highly demanding on mesh resolution compared to other terms in TKE budget. The results obtained with the finest mesh are shown to be not far from converged results of turbulent dissipation which allow us to obtain estimations of the Kolmogorov and Hinze scales. The computed Hinze scale is significantly larger than the size of droplets observed and does not seem to be a relevant length scale to describe the smallest size of droplets formed in atomization.
42 - Ben Kain , Hong Y. Ling 2017
We consider the Fermi polaron problem at zero temperature, where a single impurity interacts with non-interacting host fermions. We approach the problem starting with a Frohlich-like Hamiltonian where the impurity is described with canonical position and momentum operators. We apply the Lee-Low-Pine (LLP) transformation to change the fermionic Frohlich Hamiltonian into the fermionic LLP Hamiltonian which describes a many-body system containing host fermions only. We adapt the self-consistent Hartree-Fock (HF) approach, first proposed by Edwards, to the fermionic LLP Hamiltonian in which a pair of host fermions with momenta $mathbf{k}$ and $mathbf{k}$ interact with a potential proportional to $mathbf{k}cdotmathbf{k}$. We apply the HF theory, which has the advantage of not restricting the number of particle-hole pairs, to repulsive Fermi polarons in one dimension. When the impurity and host fermion masses are equal our variational ansatz, where HF orbitals are expanded in terms of free-particle states, produces results in excellent agreement with McGuires exact analytical results based on the Bethe ansatz. This work raises the prospect of using the HF ansatz and its time-dependent generalization as building blocks for developing all-coupling theories for both equilibrium and nonequilibrium Fermi polarons in higher dimensions
In this short note, a correction is made to the recently proposed solution [1] to a 1D biased diffusion model for linear DNA translocation and a new analysis will be given to the data in [1]. It was pointed out [2] by us recently that this 1D linear translocation model is equivalent to the one that was considered by Schrodinger [3] for the Enrenhaft-Millikan measurements [4,5] on electron charge. Here we apply Schrodingers first-passage-time distribution formula to the data set in [1]. It is found that Schrodingers formula can be used to describe the time distribution of DNA translocation in solid-state nanopores. These fittings yield two useful parameters: drift velocity of DNA translocation and diffusion constant of DNA inside the nanopore. The results suggest two regimes of DNA translocation: (I) at low voltages, there are clear deviations from Smoluchowskis linear law of electrophoresis [6] which we attribute to the entropic barrier effects; (II) at high voltages, the translocation velocity is a linear function of the applied electric field. In regime II, the apparent diffusion constant exhibits a quadratic dependence on applied electric field, suggesting a mechanism of Taylor dispersion effect likely due the electro-osmotic flow field in the nanopore channel. This analysis yields a dispersion-free diffusion constant value for the segment of DNA inside the nanopore which is in agreement with Stokes-Einstein theory quantitatively. The implication of Schrodingers formula for DNA sequencing is discussed.
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