We study charm production in ultra-relativistic heavy-ion collisions by using the Parton-Hadron-String Dynamics (PHSD) transport approach. The initial charm quarks are produced by the Pythia event generator tuned to fit the transverse momentum spectr
um and rapidity distribution of charm quarks from Fixed-Order Next-to-Leading Logarithm (FONLL) calculations. The produced charm quarks scatter in the quark-gluon plasma (QGP) with the off-shell partons whose masses and widths are given by the Dynamical Quasi-Particle Model (DQPM) which reproduces the lattice QCD equation-of-state in thermal equilibrium. The relevant cross section are calculated in a consistent way by employing the effective propagators and couplings from the DQPM. Close to the critical energy density of the phase transition, the charm quarks are hadronized into $D$ mesons through coalescence and/or fragmentation depending on transverse momentum. The hadronized $D$ mesons then interact with the various hadrons in the hadronic phase with cross sections calculated in an effective lagrangian approach with heavy-quark spin symmetry. Finally, the nuclear modification factor $rm R_{AA}$ and the elliptic flow $v_2$ of $D^0$ mesons from PHSD are compared with the experimental data from the STAR Collaboration for Au+Au collisions at $sqrt{s_{rm NN}}$ =200 GeV. We find that in the PHSD the energy loss of $D$ mesons at high $p_T$ can be dominantly attributed to partonic scattering while the actual shape of $rm R_{AA}$ versus $p_T$ reflects the heavy quark hadronization scenario, i.e. coalescence versus fragmentation. Also the hadronic rescattering is important for the $rm R_{AA}$ at low $p_T$ and enhances the $D$-meson elliptic flow $v_2$.
Based on a kinetic description of J/psi dissociation and production in an expanding quark-gluon plasma that is described by a 2+1 dimensional ideal hydrodynamics, we have studied the double ratio R_{p Pb}(psi)/R_{p Pb}(J/psi) of charmonia in p+Pb col
lisions at sqrt(s_NN)=5.02 TeV by including not only the cold nuclear matter effects but also the hot nuclear matter effects. We find that the double ratio of prompt charmonia is significantly suppressed in the most central collisions as a result of the hot nuclear matter effects.
Based on a kinetic description of J/psi dissociation and production in an expanding quark-gluon plasma that is described by a 2+1 dimensional ideal hydrodynamics, we have studied the hot medium effects on J/psi production in p+Pb collisions at sqrt{s
_{NN}}=5.02 TeV. Including also the cold nuclear matter effects, we are able to reproduce recent experimental results on the nuclear modification factor R_{pPb}(J/psi) measured by the ALICE Collaboration. We have also made predictions for the R_{pPb} of J/psi and the double ratio R_{pPb}^{pro}(psi)/R_{pPb}^{pro}(J/psi) of prompt quarkonia produced in the most central 10% p+Pb collisions. We find that different from the cold nuclear matter effects, the R_{pPb}(J/psi) is slightly smaller than that in the minimum bias collisions, and the double ratio is significantly less than one at backward rapidity.
Using a nonrelativistic potential model, we calculate the cross section for the leading-order gluon dissociation of J/psi by including the full gluon wave function. We find that the resulting cross section as a function of gluon energy is reduced by
about a factor of three at its maximum value compared to that calculated in the dipole approximation that is usually adopted in theoretical studies. The effect of the reduced cross section on the J/psi dissociation width at finite temperature is also discussed.
