We theoretically examine three-well interferometry in Bose-Einstein condensates using adiabatic passage. Specifically, we demonstrate that a fractional coherent transport adiabatic passage protocol enables stable spatial splitting in the presence of
nonlinear interactions. A reversal of this protocol produces a coherent recombination of the BEC with a phase-dependent population of the three wells. The effect of nonlinear interactions on the interferometric measurement is quantified and found to lead to an enhancement in sensitivity for moderate interaction strengths.
