Starting from our recent chemical master equation derivation of the model of an autocatalytic reaction-diffusion chemical system with reactions $U+2V {stackrel {lambda_0}{rightarrow}}~ 3 V;$ and $V {stackrel {mu}{rightarrow}}~P$, $U {stackrel { u}{ri
ghtarrow}}~ Q$, we determine the effects of intrinsic noise on the momentum-space behavior of its kinetic parameters and chemical concentrations. We demonstrate that the intrinsic noise induces $n rightarrow n$ molecular interaction processes with $n geq 4$, where $n$ is the number of molecules participating of type $U$ or $V$. The momentum dependences of the reaction rates are driven by the fact that the autocatalytic reaction (inelastic scattering) is renormalized through the existence of an arbitrary number of intermediate elastic scatterings, which can also be interpreted as the creation and subsequent decay of a three body composite state $sigma = phi_u phi_v^2$, where $phi_i$ corresponds to the fields representing the densities of $U$ and $V$. Finally, we discuss the difference between representing $sigma$ as a composite or an elementary particle (molecule) with its own kinetic parameters. In one dimension we find that while they show markedly different behavior in the short spatio-temporal scale, high momentum (UV) limit, they are formally equivalent in the large spatio-temporal scale, low momentum (IR) regime. On the other hand in two dimensions and greater, due to the effects of fluctuations, there is no way to experimentally distinguish between a fundamental and composite $sigma$. Thus in this regime $sigma$ behave as an entity unto itself suggesting that it can be effectively treated as an independent chemical species.
Data on the number of Open Reading Frames (ORFs) coded by genomes from the 3 domains of Life show some notable general features including essential differences between the Prokaryotes and Eukaryotes, with the number of ORFs growing linearly with tota
l genome size for the former, but only logarithmically for the latter. Assuming that the (protein) coding and non-coding fractions of the genome must have different dynamics and that the non-coding fraction must be controlled by a variety of (unspecified) probability distribution functions, we are able to predict that the number of ORFs for Eukaryotes follows a Benford distribution and has a specific logarithmic form. Using the data for 1000+ genomes available to us in early 2010, we find excellent fits to the data over several orders of magnitude, in the linear regime for the Prokaryote data, and the full non-linear form for the Eukaryote data. In their region of overlap the salient features are statistically congruent, which allows us to: interpret the difference between Prokaryotes and Eukaryotes as the manifestation of the increased demand in the biological functions required for the larger Eukaryotes, estimate some minimal genome sizes, and predict a maximal Prokaryote genome size on the order of 8-12 megabasepairs. These results naturally allow a mathematical interpretation in terms of maximal entropy and, therefore, most efficient information transmission.
