We construct a theoretical model for the dynamics of a microscale colloidal particle, modeled as an interval, moving horizontally on a DNA-coated surface, modelled as a line coated with springs that can stick to the interval. Averaging over the fast
DNA dynamics leads to an evolution equation for the particle in isolation, which contains both friction and diffusion. The DNA-induced friction coefficient depends on the physical properties of the DNA, and substituting parameter values typical of a 1$mu$m colloid coated densely with weakly interacting DNA gives a coefficient about 100 times larger than the corresponding coefficient of hydrodynamic friction. We use a mean-field extension of the model to higher dimensions to estimate the friction tensor for a disc rotating and translating horizontally along a line. When the DNA strands are very stiff and short, the friction coefficient for the disc rolling approaches zero while the friction for the disc sliding remains large. Together, these results could have significant implications for the dynamics of DNA-coated colloids or other ligand-receptor systems, implying that DNA-induced friction between colloids can be stronger than hydrodynamic friction and should be incorporated into simulations, and that it depends nontrivially on the type of relative motion, possibly causing the particles to assemble into out-of-equilibrium metastable states governed by the pathways with the least friction.
We present an analytical theory of topologically protected photonic states for the two-dimensional Maxwell equations for a class of continuous periodic dielectric structures, modulated by a domain wall. We further numerically confirm the applicability of this theory for three-dimensional structures.
An edge state is a time-harmonic solution of a conservative wave system, e.g. Schroedinger, Maxwell, which is propagating (plane-wave-like) parallel to, and localized transverse to, a line-defect or edge. Topologically protected edge states are edge
states which are stable against spatially localized (even strong) deformations of the edge. First studied in the context of the quantum Hall effect, protected edge states have attracted huge interest due to their role in the field of topological insulators. Theoretical understanding of topological protection has mainly come from discrete (tight-binding) models and direct numerical simulation. In this paper we consider a rich family of continuum PDE models for which we rigorously study regimes where topologically protected edge states exist. Our model is a class of Schroedinger operators on $mathbb{R}^2$ with a background 2D honeycomb potential perturbed by an edge-potential. The edge potential is a domain-wall interpolation, transverse to a prescribed rational edge, between two distinct periodic structures. General conditions are given for the bifurcation of a branch of topologically protected edge states from Dirac points of the background honeycomb structure. The bifurcation is seeded by the zero mode of a 1D effective Dirac operator. A key condition is a spectral no-fold condition for the prescribed edge. We then use this result to prove the existence of topologically protected edge states along zigzag edges of certain honeycomb structures. Our results are consistent with the physics literature and appear to be the first rigorous results on the existence of topologically protected edge states for continuum 2D PDE systems describing waves in a non-trivial periodic medium. We also show that the family of Hamiltonians we study contains cases where zigzag edge states exist, but which are not topologically protected.
