The microcanonical analysis is shown to be a powerful tool to characterize the protein folding transition and to neatly distinguish between good and bad folders. An off-lattice model with parameter chosen to represent polymers of these two types is u
sed to illustrate this approach. Both canonical and microcanonical ensembles are employed. The required calculations were performed using parallel tempering Monte Carlo simulations. The most revealing features of the folding transition are related to its first-order-like character, namely, the S-bend pattern in the caloric curve, which gives rise to negative microcanonical specific heats, and the bimodality of the energy distribution function at the transition temperatures. Models for a good folder are shown to be quite robust against perturbations in the interaction potential parameters.
The water-graphite interaction potential proposed recently (Gonzalez et al.emph{J. Phys. Chem. C} textbf{2007}, emph{111}, 14862), the three TIP$N$P ($N=3,:4,:5$) water-water interaction models, and basin-hopping global optimization are used to find
the likely candidates for the global potential energy minima of (H$_{2}$O)$_{n}$ clusters with $nleq21$ on the (0001)-surface of graphite and to perform a comparative study of these minima. We show that, except for the smaller clusters ($n<6$), for which ab-initio results are available, the three water-water potential models provide mostly inequivalent conformations. While TIP3P seems to favor monolayer water structures for $n<18$, TIP4P and TIP5P favor bilayer or volume structures for $n>6$. These $n$ values determine the threshold of dominance of the hydrophobic nature of the water-graphite interaction at the nanoscopic scale for these potential models.
