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We present a detailed analysis of the modulated-carrier quantum phase gate implemented with Wigner crystals of ions confined in Penning traps. We elaborate on a recent scheme, proposed by two of the authors, to engineer two-body interactions between ions in such crystals. We analyze for the first time the situation in which the cyclotron (w_c) and the crystal rotation (w_r) frequencies do not fulfill the condition w_c=2w_r. It is shown that even in the presence of the magnetic field in the rotating frame the many-body (classical) Hamiltonian describing small oscillations from the ion equilibrium positions can be recast in canonical form. As a consequence, we are able to demonstrate that fast and robust two-qubit gates are achievable within the current experimental limitations. Moreover, we describe a realization of the state-dependent sign-changing dipole forces needed to realize the investigated quantum computing scheme.
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