We use a large suite of N-body simulations to study departures from universality in halo abundances and clustering in cosmologies with non-vanishing neutrino masses. To this end, we study how the halo mass function and halo bias factors depend on the
scaling variable $sigma^2(M,z)$, the variance of the initial matter fluctuation field, rather than on halo mass $M$ and redshift $z$ themselves. We show that using the variance of the cold dark matter rather than the total mass field, i.e., $sigma^2_{cdm}(M,z)$ rather than $sigma^2_{m}(M,z)$, yields more universal results. Analysis of halo bias yields similar conclusions: When large-scale halo bias is defined with respect to the cold dark matter power spectrum, the result is both more universal, and less scale- or $k$-dependent. These results are used extensively in Papers I and III of this series.
