Active MR k-space Sampling with Reinforcement Learning

Deep learning approaches have recently shown great promise in accelerating magnetic resonance image (MRI) acquisition. The majority of existing work have focused on designing better reconstruction models given a pre-determined acquisition trajectory, ignoring the question of trajectory optimization. In this paper, we focus on learning acquisition trajectories given a fixed image reconstruction model. We formulate the problem as a sequential decision process and propose the use of reinforcement learning to solve it. Experiments on a large scale public MRI dataset of knees show that our proposed models significantly outperform the state-of-the-art in active MRI acquisition, over a large range of acceleration factors.

3D Shape Reconstruction from Vision and Touch

When a toddler is presented a new toy, their instinctual behaviour is to pick it upand inspect it with their hand and eyes in tandem, clearly searching over its surface to properly understand what they are playing with. At any instance here, touch provides high fidelity localized information while vision provides complementary global context. However, in 3D shape reconstruction, the complementary fusion of visual and haptic modalities remains largely unexplored. In this paper, we study this problem and present an effective chart-based approach to multi-modal shape understanding which encourages a similar fusion vision and touch information.To do so, we introduce a dataset of simulated touch and vision signals from the interaction between a robotic hand and a large array of 3D objects. Our results show that (1) leveraging both vision and touch signals consistently improves single-modality baselines; (2) our approach outperforms alternative modality fusion methods and strongly benefits from the proposed chart-based structure; (3) there construction quality increases with the number of grasps provided; and (4) the touch information not only enhances the reconstruction at the touch site but also extrapolates to its local neighborhood.

Post-Workshop Report on Science meets Engineering in Deep Learning, NeurIPS 2019, Vancouver

Science meets Engineering in Deep Learning took place in Vancouver as part of the Workshop section of NeurIPS 2019. As organizers of the workshop, we created the following report in an attempt to isolate emerging topics and recurring themes that have been presented throughout the event. Deep learning can still be a complex mix of art and engineering despite its tremendous success in recent years. The workshop aimed at gathering people across the board to address seemingly contrasting challenges in the problems they are working on. As part of the call for the workshop, particular attention has been given to the interdependence of architecture, data, and optimization that gives rise to an enormous landscape of design and performance intricacies that are not well-understood. This year, our goal was to emphasize the following directions in our community: (i) identify obstacles in the way to better models and algorithms; (ii) identify the general trends from which we would like to build scientific and potentially theoretical understanding; and (iii) the rigorous design of scientific experiments and experimental protocols whose purpose is to resolve and pinpoint the origin of mysteries while ensuring reproducibility and robustness of conclusions. In the event, these topics emerged and were broadly discussed, matching our expectations and paving the way for new studies in these directions. While we acknowledge that the text is naturally biased as it comes through our lens, here we present an attempt to do a fair job of highlighting the outcome of the workshop.

Reducing Uncertainty in Undersampled MRI Reconstruction with Active Acquisition

The goal of MRI reconstruction is to restore a high fidelity image from partially observed measurements. This partial view naturally induces reconstruction uncertainty that can only be reduced by acquiring additional measurements. In this paper, we present a novel method for MRI reconstruction that, at inference time, dynamically selects the measurements to take and iteratively refines the prediction in order to best reduce the reconstruction error and, thus, its uncertainty. We validate our method on a large scale knee MRI dataset, as well as on ImageNet. Results show that (1) our system successfully outperforms active acquisition baselines; (2) our uncertainty estimates correlate with error maps; and (3) our ResNet-based architecture surpasses standard pixel-to-pixel models in the task of MRI reconstruction. The proposed method not only shows high-quality reconstructions but also paves the road towards more applicable solutions for accelerating MRI.

Image Segmentation by Iterative Inference from Conditional Score Estimation

Inspired by the combination of feedforward and iterative computations in the virtual cortex, and taking advantage of the ability of denoising autoencoders to estimate the score of a joint distribution, we propose a novel approach to iterative inference for capturing and exploiting the complex joint distribution of output variables conditioned on some input variables. This approach is applied to image pixel-wise segmentation, with the estimated conditional score used to perform gradient ascent towards a mode of the estimated conditional distribution. This extends previous work on score estimation by denoising autoencoders to the case of a conditional distribution, with a novel use of a corrupted feedforward predictor replacing Gaussian corruption. An advantage of this approach over more classical ways to perform iterative inference for structured outputs, like conditional random fields (CRFs), is that it is not any more necessary to define an explicit energy function linking the output variables. To keep computations tractable, such energy function parametrizations are typically fairly constrained, involving only a few neighbors of each of the output variables in each clique. We experimentally find that the proposed iterative inference from conditional score estimation by conditional denoising autoencoders performs better than comparable models based on CRFs or those not using any explicit modeling of the conditional joint distribution of outputs.

ReSeg: A Recurrent Neural Network-based Model for Semantic Segmentation

We propose a structured prediction architecture, which exploits the local generic features extracted by Convolutional Neural Networks and the capacity of Recurrent Neural Networks (RNN) to retrieve distant dependencies. The proposed architecture, called ReSeg, is based on the recently introduced ReNet model for image classification. We modify and extend it to perform the more challenging task of semantic segmentation. Each ReNet layer is composed of four RNN that sweep the image horizontally and vertically in both directions, encoding patches or activations, and providing relevant global information. Moreover, ReNet layers are stacked on top of pre-trained convolutional layers, benefiting from generic local features. Upsampling layers follow ReNet layers to recover the original image resolution in the final predictions. The proposed ReSeg architecture is efficient, flexible and suitable for a variety of semantic segmentation tasks. We evaluate ReSeg on several widely-used semantic segmentation datasets: Weizmann Horse, Oxford Flower, and CamVid; achieving state-of-the-art performance. Results show that ReSeg can act as a suitable architecture for semantic segmentation tasks, and may have further applications in other structured prediction problems. The source code and model hyperparameters are available on https://github.com/fvisin/reseg.