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Register a new userA Deep Learning Approach for Masking Fetal Gender in Ultrasound Images
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Michael Fuller
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Ultrasound (US) imaging is highly effective with regards to both cost and versatility in real-time diagnosis; however, determination of fetal gender by US scan in the early stages of pregnancy is also a cause of sex-selective abortion. This work proposes a deep learning object detection approach to accurately mask fetal gender in US images in order to increase the accessibility of the technology. We demonstrate how the YOLOv5L architecture exhibits superior performance relative to other object detection models on this task. Our model achieves 45.8% AP[0.5:0.95], 92% F1-score and 0.006 False Positive Per Image rate on our test set. Furthermore, we introduce a bounding box delay rule based on frame-to-frame structural similarity to reduce the false negative rate by 85%, further improving masking reliability.
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This paper addresses the task of detecting and localising fetal anatomical regions in 2D ultrasound images, where only image-level labels are present at training, i.e. without any localisation or segmentation information. We examine the use of convolutional neural network architectures coupled with soft proposal layers. The resulting network simultaneously performs anatomical region detection (classification) and localisation tasks. We generate a proposal map describing the attention of the network for a particular class. The network is trained on 85,500 2D fetal Ultrasound images and their associated labels. Labels correspond to six anatomical regions: head, spine, thorax, abdomen, limbs, and placenta. Detection achieves an average accuracy of 90% on individual regions, and show that the proposal maps correlate well with relevant anatomical structures. This work presents itself as a powerful and essential step towards subsequent tasks such as fetal position and pose estimation, organ-specific segmentation, or image-guided navigation. Code and additional material is available at https://ntoussaint.github.io/fetalnav
In this paper, we propose an end-to-end multi-task neural network called FetalNet with an attention mechanism and stacked module for spatio-temporal fetal ultrasound scan video analysis. Fetal biometric measurement is a standard examination during pregnancy used for the fetus growth monitoring and estimation of gestational age and fetal weight. The main goal in fetal ultrasound scan video analysis is to find proper standard planes to measure the fetal head, abdomen and femur. Due to natural high speckle noise and shadows in ultrasound data, medical expertise and sonographic experience are required to find the appropriate acquisition plane and perform accurate measurements of the fetus. In addition, existing computer-aided methods for fetal US biometric measurement address only one single image frame without considering temporal features. To address these shortcomings, we propose an end-to-end multi-task neural network for spatio-temporal ultrasound scan video analysis to simultaneously localize, classify and measure the fetal body parts. We propose a new encoder-decoder segmentation architecture that incorporates a classification branch. Additionally, we employ an attention mechanism with a stacked module to learn salient maps to suppress irrelevant US regions and efficient scan plane localization. We trained on the fetal ultrasound video comes from routine examinations of 700 different patients. Our method called FetalNet outperforms existing state-of-the-art methods in both classification and segmentation in fetal ultrasound video recordings.
Fetal brain magnetic resonance imaging (MRI) offers exquisite images of the developing brain but is not suitable for anomaly screening. For this ultrasound (US) is employed. While expert sonographers are adept at reading US images, MR images are much easier for non-experts to interpret. Hence in this paper we seek to produce images with MRI-like appearance directly from clinical US images. Our own clinical motivation is to seek a way to communicate US findings to patients or clinical professionals unfamiliar with US, but in medical image analysis such a capability is potentially useful, for instance, for US-MRI registration or fusion. Our model is self-supervised and end-to-end trainable. Specifically, based on an assumption that the US and MRI data share a similar anatomical latent space, we first utilise an extractor to determine shared latent features, which are then used for data synthesis. Since paired data was unavailable for our study (and rare in practice), we propose to enforce the distributions to be similar instead of employing pixel-wise constraints, by adversarial learning in both the image domain and latent space. Furthermore, we propose an adversarial structural constraint to regularise the anatomical structures between the two modalities during the synthesis. A cross-modal attention scheme is proposed to leverage non-local spatial correlations. The feasibility of the approach to produce realistic looking MR images is demonstrated quantitatively and with a qualitative evaluation compared to real fetal MR images.
The 3D ultrasound (US) entrance inspires a multitude of automated prenatal examinations. However, studies about the structuralized description of the whole fetus in 3D US are still rare. In this paper, we propose to estimate the 3D pose of fetus in US volumes to facilitate its quantitative analyses in global and local scales. Given the great challenges in 3D US, including the high volume dimension, poor image quality, symmetric ambiguity in anatomical structures and large variations of fetal pose, our contribution is three-fold. (i) This is the first work about 3D pose estimation of fetus in the literature. We aim to extract the skeleton of whole fetus and assign different segments/joints with correct torso/limb labels. (ii) We propose a self-supervised learning (SSL) framework to finetune the deep network to form visually plausible pose predictions. Specifically, we leverage the landmark-based registration to effectively encode case-adaptive anatomical priors and generate evolving label proxy for supervision. (iii) To enable our 3D network perceive better contextual cues with higher resolution input under limited computing resource, we further adopt the gradient check-pointing (GCP) strategy to save GPU memory and improve the prediction. Extensively validated on a large 3D US dataset, our method tackles varying fetal poses and achieves promising results. 3D pose estimation of fetus has potentials in serving as a map to provide navigation for many advanced studies.
Restoring the clean background from the superimposed images containing a noisy layer is the common crux of a classical category of tasks on image restoration such as image reflection removal, image deraining and image dehazing. These tasks are typically formulated and tackled individually due to the diverse and complicated appearance patterns of noise layers within the image. In this work we present the Deep-Masking Generative Network (DMGN), which is a unified framework for background restoration from the superimposed images and is able to cope with different types of noise. Our proposed DMGN follows a coarse-to-fine generative process: a coarse background image and a noise image are first generated in parallel, then the noise image is further leveraged to refine the background image to achieve a higher-quality background image. In particular, we design the novel Residual Deep-Masking Cell as the core operating unit for our DMGN to enhance the effective information and suppress the negative information during image generation via learning a gating mask to control the information flow. By iteratively employing this Residual Deep-Masking Cell, our proposed DMGN is able to generate both high-quality background image and noisy image progressively. Furthermore, we propose a two-pronged strategy to effectively leverage the generated noise image as contrasting cues to facilitate the refinement of the background image. Extensive experiments across three typical tasks for image background restoration, including image reflection removal, image rain steak removal and image dehazing, show that our DMGN consistently outperforms state-of-the-art methods specifically designed for each single task.
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