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Register a new userIn-situ visualization of natural hazards with Galaxy and Material Point Method
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Visualizing regional-scale landslides is the key to conveying the threat of natural hazards to stakeholders and policymakers. Traditional visualization techniques are restricted to post-processing a limited subset of simulation data and are not scalable to rendering exascale models with billions of particles. In-situ visualization is a technique of rendering simulation data in real-time, i.e., rendering visuals in tandem while the simulation is running. In this study, we develop a scalable N:M interface architecture to visualize regional-scale landslides. We demonstrate the scalability of the architecture by simulating the long runout of the 2014 Oso landslide using the Material Point Method coupled with the Galaxy ray tracing engine rendering 4.2 million material points as spheres. In-situ visualization has an amortized runtime increase of 2% compared to non-visualized simulations. The developed approach can achieve in-situ visualization of regional-scale landslides with billions of particles with minimal impact on the simulation process.
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In this paper, we describe a new scalable and modular material point method (MPM) code developed for solving large-scale problems in continuum mechanics. The MPM is a hybrid Eulerian-Lagrangian approach, which uses both moving material points and computational nodes on a background mesh. The MPM has been successfully applied to solve large-deformation problems such as landslides, failure of slopes, concrete flows, etc. Solving these large-deformation problems result in the material points actively moving through the mesh. Developing an efficient parallelisation scheme for the MPM code requires dynamic load-balancing techniques for both the material points and the background mesh. This paper describes the data structures and algorithms employed to improve the performance and portability of the MPM code. An object-oriented programming paradigm is adopted to modularise the MPM code. The Unified Modelling Language (UML) diagram of the MPM code structure is shown in Figure 1.
We present a high-performance, graphics processing unit (GPU)-based framework for the efficient analysis and visualization of (nearly) terabyte (TB)-sized 3-dimensional images. Using a cluster of 96 GPUs, we demonstrate for a 0.5 TB image: (1) volume rendering using an arbitrary transfer function at 7--10 frames per second; (2) computation of basic global image statistics such as the mean intensity and standard deviation in 1.7 s; (3) evaluation of the image histogram in 4 s; and (4) evaluation of the global image median intensity in just 45 s. Our measured results correspond to a raw computational throughput approaching one teravoxel per second, and are 10--100 times faster than the best possible performance with traditional single-node, multi-core CPU implementations. A scalability analysis shows the framework will scale well to images sized 1 TB and beyond. Other parallel data analysis algorithms can be added to the framework with relative ease, and accordingly, we present our framework as a possible solution to the image analysis and visualization requirements of next-generation telescopes, including the forthcoming Square Kilometre Array pathfinder radiotelescopes.
A new thixotropic model is developed integrating the Papanastasiou-Bingham model with thixotropy equations to simulate the flow behaviour of Tremie Concrete in the Material Point Method framework. The effect of thixotropy on the rheological behaviour of fresh concrete is investigated by comparing field measurements with numerical simulations. The comparison yields new insights into a critical and often overlooked behaviour of concrete. A parametric study is performed to understand the effect of model parameters and rest-time on the shear stress response of fresh concrete. The Material Point Method with the Papanastasiou-Bingham model reproduces slump-flow measurements observed in the field. The novel model revealed a decline in concrete workability during the Slump-flow test after a period of rest due to thixotropy, which the physical version of the test fails to capture. This reduction in workability significantly affects the flow behaviour and the effective use of fresh concrete in construction operation.
A monolithic coupling between the material point method (MPM) and the finite element method (FEM) is presented. The MPM formulation described is implicit, and the exchange of information between particles and background grid is minimized. The reduced information transfer from the particles to the grid improves the stability of the method. Once the residual is assembled, the system matrix is obtained by means of automatic differentiation. In such a way, no explicit computation is required and the implementation is considerably simplified. When MPM is coupled with FEM, the MPM background grid is attached to the FEM body and the coupling is monolithic. With this strategy, no MPM particle can penetrate a FEM element, and the need for computationally expensive contact search algorithms used by existing coupling procedures is eliminated. The coupled system can be assembled with a single assembly procedure carried out element by element in a FEM fashion. Numerical results are reported to display the performances and advantages of the methods here discussed.
We outline the development of a general-purpose Python-based data analysis tool for OpenFOAM. Our implementation relies on the construction of OpenFOAM applications that have bindings to data analysis libraries in Python. Double precision data in OpenFOAM is cast to a NumPy array using the NumPy C-API and Python modules may then be used for arbitrary data analysis and manipulation on flow-field information. We highlight how the proposed wrapper may be used for an in-situ online singular value decomposition (SVD) implemented in Python and accessed from the OpenFOAM solver PimpleFOAM. Here, `in-situ refers to a programming paradigm that allows for a concurrent computation of the data analysis on the same computational resources utilized for the partial differential equation solver. In addition, to demonstrate data-parallel analyses, we deploy a distributed SVD, which collects snapshot data across the ranks of a distributed simulation to compute the global left singular vectors. Crucially, both OpenFOAM and Python share the same message passing interface (MPI) communicator for this deployment which allows Python objects and functions to exchange NumPy arrays across ranks. Subsequently, we provide scaling assessments of this distributed SVD on multiple nodes of Intel Broadwell and KNL architectures for canonical test cases such as the large eddy simulations of a backward facing step and a channel flow at friction Reynolds number of 395. Finally, we demonstrate the deployment of a deep neural network for compressing the flow-field information using an autoencoder to demonstrate an ability to use state-of-the-art machine learning tools in the Python ecosystem.
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