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Register a new userRobust Compressed Sensing MRI with Deep Generative Priors
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Ajil Jalal
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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The CSGM framework (Bora-Jalal-Price-Dimakis17) has shown that deep generative priors can be powerful tools for solving inverse problems. However, to date this framework has been empirically successful only on certain datasets (for example, human faces and MNIST digits), and it is known to perform poorly on out-of-distribution samples. In this paper, we present the first successful application of the CSGM framework on clinical MRI data. We train a generative prior on brain scans from the fastMRI dataset, and show that posterior sampling via Langevin dynamics achieves high quality reconstructions. Furthermore, our experiments and theory show that posterior sampling is robust to changes in the ground-truth distribution and measurement process. Our code and models are available at: url{https://github.com/utcsilab/csgm-mri-langevin}.
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Magnetic resonance image (MRI) reconstruction is a severely ill-posed linear inverse task demanding time and resource intensive computations that can substantially trade off {it accuracy} for {it speed} in real-time imaging. In addition, state-of-the-art compressed sensing (CS) analytics are not cognizant of the image {it diagnostic quality}. To cope with these challenges we put forth a novel CS framework that permeates benefits from generative adversarial networks (GAN) to train a (low-dimensional) manifold of diagnostic-quality MR images from historical patients. Leveraging a mixture of least-squares (LS) GANs and pixel-wise $ell_1$ cost, a deep residual network with skip connections is trained as the generator that learns to remove the {it aliasing} artifacts by projecting onto the manifold. LSGAN learns the texture details, while $ell_1$ controls the high-frequency noise. A multilayer convolutional neural network is then jointly trained based on diagnostic quality images to discriminate the projection quality. The test phase performs feed-forward propagation over the generator network that demands a very low computational overhead. Extensive evaluations are performed on a large contrast-enhanced MR dataset of pediatric patients. In particular, images rated based on expert radiologists corroborate that GANCS retrieves high contrast images with detailed texture relative to conventional CS, and pixel-wise schemes. In addition, it offers reconstruction under a few milliseconds, two orders of magnitude faster than state-of-the-art CS-MRI schemes.
Generative neural networks have been empirically found very promising in providing effective structural priors for compressed sensing, since they can be trained to span low-dimensional data manifolds in high-dimensional signal spaces. Despite the non-convexity of the resulting optimization problem, it has also been shown theoretically that, for neural networks with random Gaussian weights, a signal in the range of the network can be efficiently, approximately recovered from a few noisy measurements. However, a major bottleneck of these theoretical guarantees is a network expansivity condition: that each layer of the neural network must be larger than the previous by a logarithmic factor. Our main contribution is to break this strong expansivity assumption, showing that constant expansivity suffices to get efficient recovery algorithms, besides it also being information-theoretically necessary. To overcome the theoretical bottleneck in existing approaches we prove a novel uniform concentration theorem for random functions that might not be Lipschitz but satisfy a relaxed notion which we call pseudo-Lipschitzness. Using this theorem we can show that a matrix concentration inequality known as the Weight Distribution Condition (WDC), which was previously only known to hold for Gaussian matrices with logarithmic aspect ratio, in fact holds for constant aspect ratios too. Since the WDC is a fundamental matrix concentration inequality in the heart of all existing theoretical guarantees on this problem, our tighter bound immediately yields improvements in all known results in the literature on compressed sensing with deep generative priors, including one-bit recovery, phase retrieval, low-rank matrix recovery, and more.
Deep generative models have emerged as a powerful class of priors for signals in various inverse problems such as compressed sensing, phase retrieval and super-resolution. Here, we assume an unknown signal to lie in the range of some pre-trained generative model. A popular approach for signal recovery is via gradient descent in the low-dimensional latent space. While gradient descent has achieved good empirical performance, its theoretical behavior is not well understood. In this paper, we introduce the use of stochastic gradient Langevin dynamics (SGLD) for compressed sensing with a generative prior. Under mild assumptions on the generative model, we prove the convergence of SGLD to the true signal. We also demonstrate competitive empirical performance to standard gradient descent.
The goal of compressed sensing is to estimate a high dimensional vector from an underdetermined system of noisy linear equations. In analogy to classical compressed sensing, here we assume a generative model as a prior, that is, we assume the vector is represented by a deep generative model $G: mathbb{R}^k rightarrow mathbb{R}^n$. Classical recovery approaches such as empirical risk minimization (ERM) are guaranteed to succeed when the measurement matrix is sub-Gaussian. However, when the measurement matrix and measurements are heavy-tailed or have outliers, recovery may fail dramatically. In this paper we propose an algorithm inspired by the Median-of-Means (MOM). Our algorithm guarantees recovery for heavy-tailed data, even in the presence of outliers. Theoretically, our results show our novel MOM-based algorithm enjoys the same sample complexity guarantees as ERM under sub-Gaussian assumptions. Our experiments validate both aspects of our claims: other algorithms are indeed fragile and fail under heavy-tailed and/or corrupted data, while our approach exhibits the predicted robustness.
Reconstructing under-sampled k-space measurements in Compressed Sensing MRI (CS-MRI) is classically solved with regularized least-squares. Recently, deep learning has been used to amortize this optimization by training reconstruction networks on a dataset of under-sampled measurements. Here, a crucial design choice is the regularization function(s) and corresponding weight(s). In this paper, we explore a novel strategy of using a hypernetwork to generate the parameters of a separate reconstruction network as a function of the regularization weight(s), resulting in a regularization-agnostic reconstruction model. At test time, for a given under-sampled image, our model can rapidly compute reconstructions with different amounts of regularization. We analyze the variability of these reconstructions, especially in situations when the overall quality is similar. Finally, we propose and empirically demonstrate an efficient and data-driven way of maximizing reconstruction performance given limited hypernetwork capacity. Our code is publicly available at https://github.com/alanqrwang/RegAgnosticCSMRI.
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