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Register a new userThe interpretation of endobronchial ultrasound image using 3D convolutional neural network for differentiating malignant and benign mediastinal lesions
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The purpose of this study is to differentiate malignant and benign mediastinal lesions by using the three-dimensional convolutional neural network through the endobronchial ultrasound (EBUS) image. Compared with previous study, our proposed model is robust to noise and able to fuse various imaging features and spatiotemporal features of EBUS videos. Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a diagnostic tool for intrathoracic lymph nodes. Physician can observe the characteristics of the lesion using grayscale mode, doppler mode, and elastography during the procedure. To process the EBUS data in the form of a video and appropriately integrate the features of multiple imaging modes, we used a time-series three-dimensional convolutional neural network (3D CNN) to learn the spatiotemporal features and design a variety of architectures to fuse each imaging mode. Our model (Res3D_UDE) took grayscale mode, Doppler mode, and elastography as training data and achieved an accuracy of 82.00% and area under the curve (AUC) of 0.83 on the validation set. Compared with previous study, we directly used videos recorded during procedure as training and validation data, without additional manual selection, which might be easier for clinical application. In addition, model designed with 3D CNN can also effectively learn spatiotemporal features and improve accuracy. In the future, our model may be used to guide physicians to quickly and correctly find the target lesions for slice sampling during the inspection process, reduce the number of slices of benign lesions, and shorten the inspection time.
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Semantic image segmentation is the process of labeling each pixel of an image with its corresponding class. An encoder-decoder based approach, like U-Net and its variants, is a popular strategy for solving medical image segmentation tasks. To improve the performance of U-Net on various segmentation tasks, we propose a novel architecture called DoubleU-Net, which is a combination of two U-Net architectures stacked on top of each other. The first U-Net uses a pre-trained VGG-19 as the encoder, which has already learned features from ImageNet and can be transferred to another task easily. To capture more semantic information efficiently, we added another U-Net at the bottom. We also adopt Atrous Spatial Pyramid Pooling (ASPP) to capture contextual information within the network. We have evaluated DoubleU-Net using four medical segmentation datasets, covering various imaging modalities such as colonoscopy, dermoscopy, and microscopy. Experiments on the MICCAI 2015 segmentation challenge, the CVC-ClinicDB, the 2018 Data Science Bowl challenge, and the Lesion boundary segmentation datasets demonstrate that the DoubleU-Net outperforms U-Net and the baseline models. Moreover, DoubleU-Net produces more accurate segmentation masks, especially in the case of the CVC-ClinicDB and MICCAI 2015 segmentation challenge datasets, which have challenging images such as smaller and flat polyps. These results show the improvement over the existing U-Net model. The encouraging results, produced on various medical image segmentation datasets, show that DoubleU-Net can be used as a strong baseline for both medical image segmentation and cross-dataset evaluation testing to measure the generalizability of Deep Learning (DL) models.
The traditional image compressors, e.g., BPG and H.266, have achieved great image and video compression quality. Recently, Convolutional Neural Network has been used widely in image compression. We proposed an attention-based convolutional neural network for low bit-rate compression to post-process the output of traditional image compression decoder. Across the experimental results on validation sets, the post-processing module trained by MAE and MS-SSIM losses yields the highest PSNR of 32.10 on average at the bit-rate of 0.15.
Quantitative ultrasound (QUS) can reveal crucial information on tissue properties such as scatterer density. If the scatterer density per resolution cell is above or below 10, the tissue is considered as fully developed speckle (FDS) or low-density scatterers (LDS), respectively. Conventionally, the scatterer density has been classified using estimated statistical parameters of the amplitude of backscattered echoes. However, if the patch size is small, the estimation is not accurate. These parameters are also highly dependent on imaging settings. In this paper, we propose a convolutional neural network (CNN) architecture for QUS, and train it using simulation data. We further improve the network performance by utilizing patch statistics as additional input channels. We evaluate the network using simulation data, experimental phantoms and in vivo data. We also compare our proposed network with different classic and deep learning models, and demonstrate its superior performance in classification of tissues with different scatterer density values. The results also show that the proposed network is able to work with different imaging parameters with no need for a reference phantom. This work demonstrates the potential of CNNs in classifying scatterer density in ultrasound images.
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