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Register a new userFine-Grained System Identification of Nonlinear Neural Circuits
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We study the problem of sparse nonlinear model recovery of high dimensional compositional functions. Our study is motivated by emerging opportunities in neuroscience to recover fine-grained models of biological neural circuits using collected measurement data. Guided by available domain knowledge in neuroscience, we explore conditions under which one can recover the underlying biological circuit that generated the training data. Our results suggest insights of both theoretical and practical interests. Most notably, we find that a sign constraint on the weights is a necessary condition for system recovery, which we establish both theoretically with an identifiability guarantee and empirically on simulated biological circuits. We conclude with a case study on retinal ganglion cell circuits using data collected from mouse retina, showcasing the practical potential of this approach.
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The opioid epidemic in the United States claims over 40,000 lives per year, and it is estimated that well over two million Americans have an opioid use disorder. Over-prescription and misuse of prescription opioids play an important role in the epidemic. Individuals who are prescribed opioids, and who are diagnosed with opioid use disorder, have diverse underlying health states. Policy interventions targeting prescription opioid use, opioid use disorder, and overdose often fail to account for this variation. To identify latent health states, or phenotypes, pertinent to opioid use and opioid use disorders, we use probabilistic topic modeling with medical diagnosis histories from a statewide population of individuals who were prescribed opioids. We demonstrate that our learned phenotypes are predictive of future opioid use-related outcomes. In addition, we show how the learned phenotypes can provide important context for variability in opioid prescriptions. Understanding the heterogeneity in individual health states and in prescription opioid use can help identify policy interventions to address this public health crisis.
This report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instructions, multicore architectures or graphic boards. Three programs have been developed: PLAST-P, TPLAST-N and PLAST-X. They provide equivalent results compared to the NCBI BLAST family programs (BLAST-P, TBLAST-N and BLAST-X) with a speed-up factor ranging from 5 to 10.
Respiratory diseases, including asthma, bronchitis, pneumonia, and upper respiratory tract infection (RTI), are among the most common diseases in clinics. The similarities among the symptoms of these diseases precludes prompt diagnosis upon the patients arrival. In pediatrics, the patients limited ability in expressing their situation makes precise diagnosis even harder. This becomes worse in primary hospitals, where the lack of medical imaging devices and the doctors limited experience further increase the difficulty of distinguishing among similar diseases. In this paper, a pediatric fine-grained diagnosis-assistant system is proposed to provide prompt and precise diagnosis using solely clinical notes upon admission, which would assist clinicians without changing the diagnostic process. The proposed system consists of two stages: a test result structuralization stage and a disease identification stage. The first stage structuralizes test results by extracting relevant numerical values from clinical notes, and the disease identification stage provides a diagnosis based on text-form clinical notes and the structured data obtained from the first stage. A novel deep learning algorithm was developed for the disease identification stage, where techniques including adaptive feature infusion and multi-modal attentive fusion were introduced to fuse structured and text data together. Clinical notes from over 12000 patients with respiratory diseases were used to train a deep learning model, and clinical notes from a non-overlapping set of about 1800 patients were used to evaluate the performance of the trained model. The average precisions (AP) for pneumonia, RTI, bronchitis and asthma are 0.878, 0.857, 0.714, and 0.825, respectively, achieving a mean AP (mAP) of 0.819.
In this paper, the efficient hinging hyperplanes (EHH) neural network is proposed based on the model of hinging hyperplanes (HH). The EHH neural network is a distributed representation, the training of which involves solving several convex optimization problems and is fast. It is proved that for every EHH neural network, there is an equivalent adaptive hinging hyperplanes (AHH) tree, which was also proposed based on the model of HH and find good applications in system identification. The construction of the EHH neural network includes 2 stages. First the initial structure of the EHH neural network is randomly determined and the Lasso regression is used to choose the appropriate network. To alleviate the impact of randomness, secondly, the stacking strategy is employed to formulate a more general network structure. Different from other neural networks, the EHH neural network has interpretability ability, which can be easily obtained through its ANOVA decomposition (or interaction matrix). The interpretability can then be used as a suggestion for input variable selection. The EHH neural network is applied in nonlinear system identification, the simulation results show that the regression vector selected is reasonable and the identification speed is fast, while at the same time, the simulation accuracy is satisfactory.
Truly polymorphic circuits, whose functionality/circuit behavior can be altered using a control variable, can provide tremendous benefits in multi-functional system design and resource sharing. For secure and fault tolerant hardware designs these can be crucial as well. Polymorphic circuits work in literature so far either rely on environmental parameters such as temperature, variation etc. or on special devices such as ambipolar FET, configurable magnetic devices, etc., that often result in inefficiencies in performance and/or realization. In this paper, we introduce a novel polymorphic circuit design approach where deterministic interference between nano-metal lines is leveraged for logic computing and configuration. For computing, the proposed approach relies on nano-metal lines, their interference and commonly used FETs, and for polymorphism, it requires only an extra metal line that carries the control signal. In this paper, we show a wide range of crosstalk polymorphic (CT-P) logic gates and their evaluation results. We also show an example of a large circuit that performs both the functionalities of multiplier and sorter depending on the configuration signal. Our benchmarking results are presented in this paper. For CT-P, the transistor count was found to be significantly less compared to other existing approaches, ranging from 25% to 83%. For example, CT-P AOI21-OA21 cell show 83%, 85% and 50% transistor count reduction, and MultiplierSorter circuit show 40%, 36% and 28% transistor count reduction with respect to CMOS, genetically evolved, and ambipolar transistor based polymorphic circuits respectively.
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