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Register a new userMulti-objective Feature Selection with Missing Data in Classification
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Xue Yu
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Feature selection (FS) is an important research topic in machine learning. Usually, FS is modelled as a+ bi-objective optimization problem whose objectives are: 1) classification accuracy; 2) number of features. One of the main issues in real-world applications is missing data. Databases with missing data are likely to be unreliable. Thus, FS performed on a data set missing some data is also unreliable. In order to directly control this issue plaguing the field, we propose in this study a novel modelling of FS: we include reliability as the third objective of the problem. In order to address the modified problem, we propose the application of the non-dominated sorting genetic algorithm-III (NSGA-III). We selected six incomplete data sets from the University of California Irvine (UCI) machine learning repository. We used the mean imputation method to deal with the missing data. In the experiments, k-nearest neighbors (K-NN) is used as the classifier to evaluate the feature subsets. Experimental results show that the proposed three-objective model coupled with NSGA-III efficiently addresses the FS problem for the six data sets included in this study.
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Missing data are a concern in many real world data sets and imputation methods are often needed to estimate the values of missing data, but data sets with excessive missingness and high dimensionality challenge most approaches to imputation. Here we show that appropriate feature selection can be an effective preprocessing step for imputation, allowing for more accurate imputation and subsequent model predictions. The key feature of this preprocessing is that it incorporates uncertainty: by accounting for uncertainty due to missingness when selecting features we can reduce the degree of missingness while also limiting the number of uninformative features being used to make predictive models. We introduce a method to perform uncertainty-aware feature selection (UAFS), provide a theoretical motivation, and test UAFS on both real and synthetic problems, demonstrating that across a variety of data sets and levels of missingness we can improve the accuracy of imputations. Improved imputation due to UAFS also results in improved prediction accuracy when performing supervised learning using these imputed data sets. Our UAFS method is general and can be fruitfully coupled with a variety of imputation methods.
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We consider classification and regression tasks where we have missing data and assume that the (clean) data resides in a low rank subspace. Finding a hidden subspace is known to be computationally hard. Nevertheless, using a non-proper formulation we give an efficient agnostic algorithm that classifies as good as the best linear classifier coupled with the best low-dimensional subspace in which the data resides. A direct implication is that our algorithm can linearly (and non-linearly through kernels) classify provably as well as the best classifier that has access to the full data.
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