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Spatio-Temporal Neural Network for Fitting and Forecasting COVID-19

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 Added by Yi-Shuai Niu
 Publication date 2021
and research's language is English




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We established a Spatio-Temporal Neural Network, namely STNN, to forecast the spread of the coronavirus COVID-19 outbreak worldwide in 2020. The basic structure of STNN is similar to the Recurrent Neural Network (RNN) incorporating with not only temporal data but also spatial features. Two improved STNN architectures, namely the STNN with Augmented Spatial States (STNN-A) and the STNN with Input Gate (STNN-I), are proposed, which ensure more predictability and flexibility. STNN and its variants can be trained using Stochastic Gradient Descent (SGD) algorithm and its improved variants (e.g., Adam, AdaGrad and RMSProp). Our STNN models are compared with several classical epidemic prediction models, including the fully-connected neural network (BPNN), and the recurrent neural network (RNN), the classical curve fitting models, as well as the SEIR dynamical system model. Numerical simulations demonstrate that STNN models outperform many others by providing more accurate fitting and prediction, and by handling both spatial and temporal data.



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209 - Amol Kapoor , Xue Ben , Luyang Liu 2020
In this work, we examine a novel forecasting approach for COVID-19 case prediction that uses Graph Neural Networks and mobility data. In contrast to existing time series forecasting models, the proposed approach learns from a single large-scale spatio-temporal graph, where nodes represent the region-level human mobility, spatial edges represent the human mobility based inter-region connectivity, and temporal edges represent node features through time. We evaluate this approach on the US county level COVID-19 dataset, and demonstrate that the rich spatial and temporal information leveraged by the graph neural network allows the model to learn complex dynamics. We show a 6% reduction of RMSLE and an absolute Pearson Correlation improvement from 0.9978 to 0.998 compared to the best performing baseline models. This novel source of information combined with graph based deep learning approaches can be a powerful tool to understand the spread and evolution of COVID-19. We encourage others to further develop a novel modeling paradigm for infectious disease based on GNNs and high resolution mobility data.
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82 - Zhen Han , Yunpu Ma , Yuyi Wang 2020
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170 - Shuang Li , Lu Wang , Xinyun Chen 2021
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