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The dynamics of citys spatial structures are determined by the coupling of functional components (such as restaurants and shops) and human beings within the city. Yet, there still lacks mechanism models to quantify the spatial distribution of functional components. Here, we establish a gradient model to simulate the density curves of multiple types of components based on the equilibria of gravitational and repulsive forces along the urban-rural gradient. The forces from city center to components are determined by both the citys attributes (land rent, population and peoples environmental preferences) and the components attributes (supply capacity, product transportability and environmental impacts). The simulation for the distribution curves of 22 types of components on the urban-rural gradient are a good fit for the real-world data in cities. Based on the 4 typical types of components, the model reveals a bottom-up self-organizing mechanism that is, the patterns in city development are determined by the economic, ecological, and social attributes of both cities and components. Based on the mechanism, we predict the distribution curves of many types of components along with the development of cities. The model provides a general tool for analyzing the distribution of objects on the gradients.
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As a huge threat to the public health, Chinas air pollution has attracted extensive attention and continues to grow in tandem with the economy. Although the real-time air quality report can be utilized to update our knowledge on air quality, questions about how pollutants evolve across time and how pollutants are spatially correlated still remain a puzzle. In view of this point, we adopt the PMFG network method to analyze the six pollutants hourly data in 350 Chinese cities in an attempt to find out how these pollutants are correlated temporally and spatially. In terms of time dimension, the results indicate that, except for O$_3$, the pollutants have a common feature of the strong intraday patterns of which the daily variations are composed of two contraction periods and two expansion periods. Besides, all the time series of the six pollutants possess strong long-term correlations, and this temporal memory effect helps to explain why smoggy days are always followed by one after another. In terms of space dimension, the correlation structure shows that O$_3$ is characterized by the highest spatial connections. The PMFGs reveal the relationship between this spatial correlation and provincial administrative divisions by filtering the hierarchical structure in the correlation matrix and refining the cliques as the tinny spatial clusters. Finally, we check the stability of the correlation structure and conclude that, except for PM$_{10}$ and O$_3$, the other pollutants have an overall stable correlation, and all pollutants have a slight trend to become more divergent in space. These results not only enhance our understanding of the air pollutants evolutionary process, but also shed lights on the application of complex network methods into geographic issues.
Understanding quantitative relationships between urban elements is crucial for a wide range of applications. The observation at the macroscopic level demonstrates that the aggregated urban quantities (e.g., gross domestic product) scale systematically with population sizes across cities, also known as urban scaling laws. However, at the mesoscopic level, we lack an understanding of whether the simple scaling relationship holds within cities, which is a fundamental question regarding the spatial origin of scaling in urban systems. Here, by analyzing four extensive datasets covering millions of mobile phone users and urban facilities, we investigate the scaling phenomena within cities. We find that the mesoscopic infrastructure volume and socioeconomic activity scale sub- and super-linearly with the active population, respectively. For a same scaling phenomenon, however, the exponents vary in cities of similar population sizes. To explain these empirical observations, we propose a conceptual framework by considering the heterogeneous distributions of population and facilities, and the spatial interactions between them. Analytical and numerical results suggest that, despite the large number of complexities that influence urban activities, the simple interaction rules can effectively explain the observed regularity and heterogeneity in scaling behaviors within cities.
Despite the long history of modelling human mobility, we continue to lack a highly accurate approach with low data requirements for predicting mobility patterns in cities. Here, we present a population-weighted opportunities model without any adjustable parameters to capture the underlying driving force accounting for human mobility patterns at the city scale. We use various mobility data collected from a number of cities with different characteristics to demonstrate the predictive power of our model. We find that insofar as the spatial distribution of population is available, our model offers universal prediction of mobility patterns in good agreement with real observations, including distance distribution, destination travel constraints and flux. In contrast, the models that succeed in modelling mobility patterns in countries are not applicable in cities, which suggests that there is a diversity of human mobility at different spatial scales. Our model has potential applications in many fields relevant to mobility behaviour in cities, without relying on previous mobility measurements.
DNA methylation is an epigenetic mechanism whose important role in development has been widely recognized. This epigenetic modification results in heritable changes in gene expression not encoded by the DNA sequence. The underlying mechanisms controlling DNA methylation are only partly understood and recently different mechanistic models of enzyme activities responsible for DNA methylation have been proposed. Here we extend existing Hidden Markov Models (HMMs) for DNA methylation by describing the occurrence of spatial methylation patterns over time and propose several models with different neighborhood dependencies. We perform numerical analysis of the HMMs applied to bisulfite sequencing measurements and accurately predict wild-type data. In addition, we find evidence that the enzymes activities depend on the left 5 neighborhood but not on the right 3 neighborhood.
We show that the definition of the city boundaries can have a dramatic influence on the scaling behavior of the night-time light (NTL) as a function of population (POP) in the US. Precisely, our results show that the arbitrary geopolitical definition based on the Metropolitan/Consolidated Metropolitan Statistical Areas (MSA/CMSA) leads to a sublinear power-law growth of NTL with POP. On the other hand, when cities are defined according to a more natural agglomeration criteria, namely, the City Clustering Algorithm (CCA), an isometric relation emerges between NTL and population. This discrepancy is compatible with results from previous works showing that the scaling behaviors of various urban indicators with population can be substantially different for distinct definitions of city boundaries. Moreover, considering the CCA definition as more adequate than the MSA/CMSA one because the former does not violate the expected extensivity between land population and area of their generated clusters, we conclude that, without loss of generality, the CCA measures of light pollution and population could be interchangeably utilized in future studies.
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