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Register a new userTowards More Accurate Automatic Sleep Staging via Deep Transfer Learning
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Background: Despite recent significant progress in the development of automatic sleep staging methods, building a good model still remains a big challenge for sleep studies with a small cohort due to the data-variability and data-inefficiency issues. This work presents a deep transfer learning approach to overcome these issues and enable transferring knowledge from a large dataset to a small cohort for automatic sleep staging. Methods: We start from a generic end-to-end deep learning framework for sequence-to-sequence sleep staging and derive two networks as the means for transfer learning. The networks are first trained in the source domain (i.e. the large database). The pretrained networks are then finetuned in the target domain (i.e. the small cohort) to complete knowledge transfer. We employ the Montreal Archive of Sleep Studies (MASS) database consisting of 200 subjects as the source domain and study deep transfer learning on three different target domains: the Sleep Cassette subset and the Sleep Telemetry subset of the Sleep-EDF Expanded database, and the Surrey-cEEGrid database. The target domains are purposely adopted to cover different degrees of data mismatch to the source domains. Results: Our experimental results show significant performance improvement on automatic sleep staging on the target domains achieved with the proposed deep transfer learning approach. Conclusions: These results suggest the efficacy of the proposed approach in addressing the above-mentioned data-variability and data-inefficiency issues. Significance: As a consequence, it would enable one to improve the quality of automatic sleep staging models when the amount of data is relatively small. The source code and the pretrained models are available at http://github.com/pquochuy/sleep_transfer_learning.
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Many sleep studies suffer from the problem of insufficient data to fully utilize deep neural networks as different labs use different recordings set ups, leading to the need of training automated algorithms on rather small databases, whereas large annotated databases are around but cannot be directly included into these studies for data compensation due to channel mismatch. This work presents a deep transfer learning approach to overcome the channel mismatch problem and transfer knowledge from a large dataset to a small cohort to study automatic sleep staging with single-channel input. We employ the state-of-the-art SeqSleepNet and train the network in the source domain, i.e. the large dataset. Afterwards, the pretrained network is finetuned in the target domain, i.e. the small cohort, to complete knowledge transfer. We study two transfer learning scenarios with slight and heavy channel mismatch between the source and target domains. We also investigate whether, and if so, how finetuning entirely or partially the pretrained network would affect the performance of sleep staging on the target domain. Using the Montreal Archive of Sleep Studies (MASS) database consisting of 200 subjects as the source domain and the Sleep-EDF Expanded database consisting of 20 subjects as the target domain in this study, our experimental results show significant performance improvement on sleep staging achieved with the proposed deep transfer learning approach. Furthermore, these results also reveal the essential of finetuning the feature-learning parts of the pretrained network to be able to bypass the channel mismatch problem.
Sleep staging is fundamental for sleep assessment and disease diagnosis. Although previous attempts to classify sleep stages have achieved high classification performance, several challenges remain open: 1) How to effectively extract salient waves in multimodal sleep data; 2) How to capture the multi-scale transition rules among sleep stages; 3) How to adaptively seize the key role of specific modality for sleep staging. To address these challenges, we propose SalientSleepNet, a multimodal salient wave detection network for sleep staging. Specifically, SalientSleepNet is a temporal fully convolutional network based on the $rm U^2$-Net architecture that is originally proposed for salient object detection in computer vision. It is mainly composed of two independent $rm U^2$-like streams to extract the salient features from multimodal data, respectively. Meanwhile, the multi-scale extraction module is designed to capture multi-scale transition rules among sleep stages. Besides, the multimodal attention module is proposed to adaptively capture valuable information from multimodal data for the specific sleep stage. Experiments on the two datasets demonstrate that SalientSleepNet outperforms the state-of-the-art baselines. It is worth noting that this model has the least amount of parameters compared with the existing deep neural network models.
Sleep staging plays an important role on the diagnosis of sleep disorders. In general, experts classify sleep stages manually based on polysomnography (PSG), which is quite time-consuming. Meanwhile, the acquisition process of multiple signals is much complex, which can affect the subjects sleep. Therefore, the use of single-channel electroencephalogram (EEG) for automatic sleep staging has become a popular research topic. In the literature, a large number of sleep staging methods based on single-channel EEG have been proposed with promising results and achieve the preliminary automation of sleep staging. However, the performance for most of these methods in the N1 stage do not satisfy the needs of the diagnosis. In this paper, we propose a deep learning model multi scale dual attention network(MSDAN) based on raw EEG, which utilizes multi-scale convolution to extract features in different waveforms contained in the EEG signal, connects channel attention and spatial attention mechanisms in series to filter and highlight key information, and uses soft thresholding to remove redundant information. Experiments were conducted using two datasets with 5-fold cross-validation and hold-out validation method. The final average accuracy, overall accuracy, macro F1 score and Cohens Kappa coefficient of the model reach 96.70%, 91.74%, 0.8231 and 0.8723 on the Sleep-EDF dataset, 96.14%, 90.35%, 0.7945 and 0.8284 on the Sleep-EDFx dataset. Significantly, our model performed superiorly in the N1 stage, with F1 scores of 54.41% and 52.79% on the two datasets respectively. The results show the superiority of our network over the existing methods, reaching a new state-of-the-art. In particular, the proposed method achieves excellent results in the N1 sleep stage compared to other methods.
EEG signals are usually simple to obtain but expensive to label. Although supervised learning has been widely used in the field of EEG signal analysis, its generalization performance is limited by the amount of annotated data. Self-supervised learning (SSL), as a popular learning paradigm in computer vision (CV) and natural language processing (NLP), can employ unlabeled data to make up for the data shortage of supervised learning. In this paper, we propose a self-supervised contrastive learning method of EEG signals for sleep stage classification. During the training process, we set up a pretext task for the network in order to match the right transformation pairs generated from EEG signals. In this way, the network improves the representation ability by learning the general features of EEG signals. The robustness of the network also gets improved in dealing with diverse data, that is, extracting constant features from changing data. In detail, the networks performance depends on the choice of transformations and the amount of unlabeled data used in the training process of self-supervised learning. Empirical evaluations on the Sleep-edf dataset demonstrate the competitive performance of our method on sleep staging (88.16% accuracy and 81.96% F1 score) and verify the effectiveness of SSL strategy for EEG signal analysis in limited labeled data regimes. All codes are provided publicly online.
Despite the tremendous progress recently made towards automatic sleep staging in adults, it is currently known if the most advanced algorithms generalize to the pediatric population, which displays distinctive characteristics in overnight polysomnography (PSG). To answer the question, in this work, we conduct a large-scale comparative study on the state-of-the-art deep learning methods for pediatric automatic sleep staging. A selection of six different deep neural networks with diverging features are adopted to evaluate a sample of more than 1,200 children across a wide spectrum of obstructive sleep apnea (OSA) severity. Our experimental results show that the performance of automated pediatric sleep staging when evaluated on new subjects is equivalent to the expert-level one reported on adults, reaching an overall accuracy of 87.0%, a Cohens kappa of 0.829, and a macro F1-score of 83.5% in case of single-channel EEG. The performance is further improved when dual-channel EEG$cdot$EOG are used, reaching an accuracy of 88.2%, a Cohens kappa of 0.844, and a macro F1-score of 85.1%. The results also show that the studied algorithms are robust to concept drift when the training and test data were recorded 7-months apart. Detailed analyses further demonstrate almost perfect agreement between the automatic scorers to one another and their similar behavioral patterns on the staging errors.
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