No Arabic abstract
We numerically study the escape kinetics of a self-propelled Janus particle, carrying a cargo, from a meta-stable state. We assume that the cargo is attached to the Janus particle by a flexible harmonic spring. We take into account the effect of velocity field, created in the fluid due to movements of dimers components, by considering space-dependent diffusion tensor (Oseen tensor). Our simulation results show that the synchronization between barrier crossing events and rotational relaxation process can enhance escape rate to a large extent. Also, the load carrying capability of a Janus particle is largely controlled by its rotational dynamics and self-propulsion velocity. Moreover, the hydrodynamic interaction, conspicuously, enhances the escape rate of the Janus-cargo dimer. The most of the important features in escape kinetics have been justified based on the analytic arguments.
Active particles with their characteristic feature of self-propulsion are regarded as the simplest models for motility in living systems. The accumulation of active particles in low activity regions has led to the general belief that chemotaxis requires additional features and at least a minimal ability to process information and to control motion. We show that self-propelled particles display chemotaxis and move into regions of higher activity, if the particles perform work on passive objects, or cargo, to which they are bound. The origin of this cooperative chemotaxis is the exploration of the activity gradient by the active particle when bound to a load, resulting in an average excess force on the load in the direction of higher activity. Using a minimalistic theoretical model, we capture the most relevant features of these active-passive dimers and in particular we predict the crossover between anti-chemotactic and chemotactic behaviour. Moreover we show that merely connecting active particles to chains is sufficient to obtain the crossover from anti-chemotaxis to chemotaxis with increasing chain length. Such an active complex is capable of moving up a gradient of activity such as provided by a gradient of fuel and to accumulate where the fuel concentration is at its maximum. The observed transition is of significance to proto-forms of life enabling them to locate a source of nutrients even in the absence of any supporting sensomotoric apparatus.
The Kinesin family of motor proteins are involved in a variety of cellular processes that transport materials and generate force. With recent advances in experimental techniques, such as optical tweezers which can probe individual molecules, there has been an increasing interest in understanding the mechanisms by which motor proteins convert chemical energy into mechanical work. Here we present a mathematical model for the chemistry and three dimensional mechanics of the Kinesin motor protein which captures many of the force dependent features of the motor. For the elasticity of the tether that attaches cargo to the motor we develop a method for deriving the non-linear force-extension relationship from optical trap data. For the Kinesin heads, cargo, and microscope stage we formulate a three dimensional Brownian Dynamics model that takes into account excluded volume interactions. To efficiently compute statistics from the model an algorithm is proposed that uses a two step protocol that separates the simulation of the mechanical features of the model from the chemical kinetics of the model. Using this approach for a bead transported by the motor, the force dependent average velocity and randomness parameter are computed and compared with the experimental data.
We investigate the hopping dynamics of a colloidal particle across a potential barrier and within a viscoelastic, i.e., non-Markovian bath, and report two clearly separated time scales in the corresponding waiting time distributions. While the longer time scale exponentially depends on the barrier height, the shorter one is similar to the relaxation time of the fluid. This short time scale is a signature of the storage and release of elastic energy inside the bath, that strongly increases the hopping rate. Our results are in excellent agreement with numerical simulations of a simple Maxwell model.
The diffusion of an artificial active particle in a two-dimensional periodic pattern of stationary convection cells is investigated by means of extensive numerical simulations. In the limit of large Peclet numbers, i.e., for self-propulsion speeds below a certain depinning threshold and weak roto-translational fluctuations, the particle undergoes asymptotic normal diffusion with diffusion constant proportional to the square root of its diffusion constant at zero flow. Chirality effects in the propulsion mechanism, modeled here by a tunable applied torque, favors particles jumping between adjacent convection rolls. Roll jumping is signaled by an excess diffusion peak, which appears to separate two distinct active diffusion regimes for low and high chirality. A qualitative interpretation of our simulation results is proposed as a first step toward a fully analytical study of this phenomenon.
We theoretically study the non-monotonic (re-entrant) activated dynamics associated with a repulsive glass to fluid to attractive glass transition in high density particle suspensions interacting via strong short range attractive forces. The classic theoretical projection approximation that replaces all microscopic forces by a single effective force determined solely by equilibrium pair correlations is revisited based on the projectionless dynamic theory (PDT) that avoids force projection. A hybrid-PDT is formulated that explicitly quantifies how attractive forces induce dynamical constraints, while singular hard core interactions are treated based on the projection approach. Both the effects of interference between repulsive and attractive forces, and structural changes due to attraction-induced bond formation that competes with caging, are included. Combined with the microscopic Elastically Collective Nonlinear Langevin Equation (ECNLE) theory of activated relaxation, the resultant approach appears to properly capture both the re-entrant dynamic crossover behavior and the strong non-monotonic variation of the activated structural relaxation time with attraction strength and range at very high volume fractions. Qualitative differences with ECNLE theory-based results that adopt the full projection approximation are identified, and testable predictions made. The new formulation appears qualitatively consistent with multiple experimental and simulation studies, and provides a new perspective for the overall problem that is rooted in activated motion and interference between repulsive and attractive forces. This is conceptually distinct from empirical shifting or other ad hoc modifications of ideal mode coupling theory which do not take into account activated dynamics. Implications for thermal glass forming liquids are briefly discussed.