Do you want to publish a course? Click here

Non-equilibrium correlations in minimal dynamical models of polymer copying

107   0   0.0 ( 0 )
 Added by Jenny Poulton
 Publication date 2018
  fields Physics
and research's language is English




Ask ChatGPT about the research

Living systems produce persistent copies of information-carrying polymers, in which template and copy sequences remain correlated after physically decoupling. We identify a general measure of the thermodynamic efficiency with which these non-equilibrium states are created, and analyze the accuracy and efficiency of a family of dynamical models that produce persistent copies. For the weakest chemical driving, when polymer growth occurs in equilibrium, both the copy accuracy and, more surprisingly, the efficiency vanish. At higher driving strengths, accuracy and efficiency both increase, with efficiency showing one or more peaks at moderate driving. Correlations generated within the copy sequence, as well as between template and copy, store additional free energy in the copied polymer and limit the single-site accuracy for a given chemical work input. Our results provide insight in the design of natural self-replicating systems and can aid the design of synthetic replicators.

rate research

Read More

80 - Pedro L. Garrido 2021
We study the behavior of stationary non-equilibrium two-body correlation functions for Diffusive Systems with equilibrium reference states (DSe). A DSe is described at the mesoscopic level by $M$ locally conserved continuum fields that evolve through coupled Langevin equations with white noises. The dynamic is designed such that the system may reach equilibrium states for a set of boundary conditions. In this form, just by changing the equilibrium boundary conditions, we make the system driven to a non-equilibrium stationary state. We decompose the correlations in a known local equilibrium part and another one that contains the non-equilibrium behavior and that we call {it correlations excess} $bar C(x,z)$. We formally derive the differential equations for $bar C$. We define a perturbative expansion around the equilibrium state to solve them order by order. We show that the $bar C$s first-order expansion, $bar C^{(1)}$, is always zero for the unique field case, $M=1$. Moreover $bar C^{(1)}$ is always long-range or zero when $M>1$. Surprisingly we show that their associated fluctuations, the space integrals of $bar C^{(1)}$, are always zero. Therefore, the fluctuations are dominated by the local equilibrium behavior up to second order in the perturbative expansion around the equilibrium. We derive the behaviors of $bar C^{(1)}$ in real space for dimensions $d=1$ and $2$ explicitly, and we apply the analysis to a generic $M=2$ case and, in particular, to a hydrodynamic model where we explicitly compute the two first perturbative orders, $bar C^{(1),(2)}$, and its associated fluctuations.
We derive an exact formula for the scaled cumulant generating function of the time-integrated current associated to an arbitrary ballistically transported conserved charge. Our results rely on the Euler-scale description of interacting, many-body, integrable models out of equilibrium given by the generalized hydrodynamics, and on the large deviation theory. Crucially, our findings extend previous studies by accounting for inhomogeneous and dynamical initial states in interacting systems. We present exact expressions for the first three cumulants of the time-integrated current. Considering the non-interacting limit of our general expression for the scaled cumulant generating function, we further show that for the partitioning protocol initial state our result coincides with previous results of the literature. Given the universality of the generalized hydrodynamics, the expression obtained for the scaled cumulant generating function is applicable to any interacting integrable model obeying the hydrodynamic equations, both classical and quantum.
We use fluctuating hydrodynamics to analyze the dynamical properties in the non-equilibrium steady state of a diffusive system coupled with reservoirs. We derive the two-time correlations of the density and of the current in the hydrodynamic limit in terms of the diffusivity and the mobility. Within this hydrodynamic framework we discuss a generalization of the fluctuation dissipation relation in a non-equilibrium steady state where the response function is expressed in terms of the two-time correlations. We compare our results to an exact solution of the symmetric exclusion process. This exact solution also allows one to directly verify the fluctuating hydrodynamics equation.
102 - Shoichi Ichinose 2014
A geometric approach to the friction phenomena is presented. It is based on the holographic view which has recently been popular in the theoretical physics community. We see the system in one-dimension-higher space. The heat-producing phenomena are most widely treated by using the non-equilibrium statistical physics. We take 2 models of the earthquake. The dissipative systems are here formulated from the geometric standpoint. The statistical fluctuation is taken into account by using the (generalized) Feynmans path-integral.
As shown by early studies on mean-field models of the glass transition, the geometrical features of the energy landscape provide fundamental information on the dynamical transition at the Mode-Coupling temperature $T_d$. We show that active particles can serve as a useful tool for gaining insight into the topological crossover in model glass-formers. In such systems the landmark of the minima-to-saddle transition in the potential energy landscape, taking place in the proximity of $T_d$, is the critical slowing down of dynamics. Nevertheless, the critical slowing down is a bottleneck for numerical simulations and the possibility to take advantage of the new smart algorithms capable to thermalize down in the glass phase is attractive. Our proposal is to consider configurations equilibrated below the threshold and study their dynamics in the presence of a small amount of self-propulsion. As exemplified here from the study of the p-spin model, the presence of self-propulsion gives rise to critical off-equilibrium equal-time correlations at the minima-to-saddles crossover, correlations which are not hindered by the sluggish glassy dynamics.
comments
Fetching comments Fetching comments
Sign in to be able to follow your search criteria
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا