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Register a new userLarge-Scale Sparse Inverse Covariance Estimation via Thresholding and Max-Det Matrix Completion
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The sparse inverse covariance estimation problem is commonly solved using an $ell_{1}$-regularized Gaussian maximum likelihood estimator known as graphical lasso, but its computational cost becomes prohibitive for large data sets. A recent line of results showed--under mild assumptions--that the graphical lasso estimator can be retrieved by soft-thresholding the sample covariance matrix and solving a maximum determinant matrix completion (MDMC) problem. This paper proves an extension of this result, and describes a Newton-CG algorithm to efficiently solve the MDMC problem. Assuming that the thresholded sample covariance matrix is sparse with a sparse Cholesky factorization, we prove that the algorithm converges to an $epsilon$-accurate solution in $O(nlog(1/epsilon))$ time and $O(n)$ memory. The algorithm is highly efficient in practice: we solve the associated MDMC problems with as many as 200,000 variables to 7-9 digits of accuracy in less than an hour on a standard laptop computer running MATLAB.
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In this paper, we consider the Graphical Lasso (GL), a popular optimization problem for learning the sparse representations of high-dimensional datasets, which is well-known to be computationally expensive for large-scale problems. Recently, we have shown that the sparsity pattern of the optimal solution of GL is equivalent to the one obtained from simply thresholding the sample covariance matrix, for sparse graphs under different conditions. We have also derived a closed-form solution that is optimal when the thresholded sample covariance matrix has an acyclic structure. As a major generalization of the previous result, in this paper we derive a closed-form solution for the GL for graphs with chordal structures. We show that the GL and thresholding equivalence conditions can significantly be simplified and are expected to hold for high-dimensional problems if the thresholded sample covariance matrix has a chordal structure. We then show that the GL and thresholding equivalence is enough to reduce the GL to a maximum determinant matrix completion problem and drive a recursive closed-form solution for the GL when the thresholded sample covariance matrix has a chordal structure. For large-scale problems with up to 450 million variables, the proposed method can solve the GL problem in less than 2 minutes, while the state-of-the-art methods converge in more than 2 hours.
Across a variety of scientific disciplines, sparse inverse covariance estimation is a popular tool for capturing the underlying dependency relationships in multivariate data. Unfortunately, most estimators are not scalable enough to handle the sizes of modern high-dimensional data sets (often on the order of terabytes), and assume Gaussian samples. To address these deficiencies, we introduce HP-CONCORD, a highly scalable optimization method for estimating a sparse inverse covariance matrix based on a regularized pseudolikelihood framework, without assuming Gaussianity. Our parallel proximal gradient method uses a novel communication-avoiding linear algebra algorithm and runs across a multi-node cluster with up to 1k nodes (24k cores), achieving parallel scalability on problems with up to ~819 billion parameters (1.28 million dimensions); even on a single node, HP-CONCORD demonstrates scalability, outperforming a state-of-the-art method. We also use HP-CONCORD to estimate the underlying dependency structure of the brain from fMRI data, and use the result to identify functional regions automatically. The results show good agreement with a clustering from the neuroscience literature.
In sparse principal component analysis we are given noisy observations of a low-rank matrix of dimension $ntimes p$ and seek to reconstruct it under additional sparsity assumptions. In particular, we assume here each of the principal components $mathbf{v}_1,dots,mathbf{v}_r$ has at most $s_0$ non-zero entries. We are particularly interested in the high dimensional regime wherein $p$ is comparable to, or even much larger than $n$. In an influential paper, cite{johnstone2004sparse} introduced a simple algorithm that estimates the support of the principal vectors $mathbf{v}_1,dots,mathbf{v}_r$ by the largest entries in the diagonal of the empirical covariance. This method can be shown to identify the correct support with high probability if $s_0le K_1sqrt{n/log p}$, and to fail with high probability if $s_0ge K_2 sqrt{n/log p}$ for two constants $0<K_1,K_2<infty$. Despite a considerable amount of work over the last ten years, no practical algorithm exists with provably better support recovery guarantees. Here we analyze a covariance thresholding algorithm that was recently proposed by cite{KrauthgamerSPCA}. On the basis of numerical simulations (for the rank-one case), these authors conjectured that covariance thresholding correctly recover the support with high probability for $s_0le Ksqrt{n}$ (assuming $n$ of the same order as $p$). We prove this conjecture, and in fact establish a more general guarantee including higher-rank as well as $n$ much smaller than $p$. Recent lower bounds cite{berthet2013computational, ma2015sum} suggest that no polynomial time algorithm can do significantly better. The key technical component of our analysis develops new bounds on the norm of kernel random matrices, in regimes that were not considered before.
Iterative hard thresholding (IHT) is a projected gradient descent algorithm, known to achieve state of the art performance for a wide range of structured estimation problems, such as sparse inference. In this work, we consider IHT as a solution to the problem of learning sparse discrete distributions. We study the hardness of using IHT on the space of measures. As a practical alternative, we propose a greedy approximate projection which simultaneously captures appropriate notions of sparsity in distributions, while satisfying the simplex constraint, and investigate the convergence behavior of the resulting procedure in various settings. Our results show, both in theory and practice, that IHT can achieve state of the art results for learning sparse distributions.
We consider the class of convex minimization problems, composed of a self-concordant function, such as the $logdet$ metric, a convex data fidelity term $h(cdot)$ and, a regularizing -- possibly non-smooth -- function $g(cdot)$. This type of problems have recently attracted a great deal of interest, mainly due to their omnipresence in top-notch applications. Under this emph{locally} Lipschitz continuous gradient setting, we analyze the convergence behavior of proximal Newton schemes with the added twist of a probable presence of inexact evaluations. We prove attractive convergence rate guarantees and enhance state-of-the-art optimization schemes to accommodate such developments. Experimental results on sparse covariance estimation show the merits of our algorithm, both in terms of recovery efficiency and complexity.
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