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Register a new userTechnical Report - Automatic Contour Extraction from 2D Neuron Images
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This work describes a novel methodology for automatic contour extraction from 2D images of 3D neurons (e.g. camera lucida images and other types of 2D microscopy). Most contour-based shape analysis methods can not be used to characterize such cells because of overlaps between neuronal processes. The proposed framework is specifically aimed at the problem of contour following even in presence of multiple overlaps. First, the input image is preprocessed in order to obtain an 8-connected skeleton with one-pixel-wide branches, as well as a set of critical regions (i.e., bifurcations and crossings). Next, for each subtree, the tracking stage iteratively labels all valid pixel of branches, up to a critical region, where it determines the suitable direction to proceed. Finally, the labeled skeleton segments are followed in order to yield the parametric contour of the neuronal shape under analysis. The reported system was successfully tested with respect to several images and the results from a set of three neuron images are presented here, each pertaining to a different class, i.e. alpha, delta and epsilon ganglion cells, containing a total of 34 crossings. The algorithms successfully got across all these overlaps. The method has also been found to exhibit robustness even for images with close parallel segments. The proposed method is robust and may be implemented in an efficient manner. The introduction of this approach should pave the way for more systematic application of contour-based shape analysis methods in neuronal morphology.
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Mapping road networks is currently both expensive and labor-intensive. High-resolution aerial imagery provides a promising avenue to automatically infer a road network. Prior work uses convolutional neural networks (CNNs) to detect which pixels belong to a road (segmentation), and then uses complex post-processing heuristics to infer graph connectivity. We show that these segmentation methods have high error rates because noisy CNN outputs are difficult to correct. We propose RoadTracer, a new method to automatically construct accurate road network maps from aerial images. RoadTracer uses an iterative search process guided by a CNN-based decision function to derive the road network graph directly from the output of the CNN. We compare our approach with a segmentation method on fifteen cities, and find that at a 5% error rate, RoadTracer correctly captures 45% more junctions across these cities.
EventNet is a large-scale video corpus and event ontology consisting of 500 events associated with event-specific concepts. In order to improve the quality of the current EventNet, we conduct the following steps and introduce EventNet version 1.1: (1) manually verify the correctness of event labels for all videos; (2) remove the YouTube user bias by limiting the maximum number of videos in each event from the same YouTube user as 3; (3) remove the videos which are currently not accessible online; (4) remove the video belonging to multiple event categories. After the above procedure, some events may contain only a small number of videos, and therefore we crawl more videos for those events to ensure every event will contain more than 50 videos. Finally, EventNet version 1.1 contains 67,641 videos, 500 events, and 5,028 event-specific concepts. In addition, we train a Convolutional Neural Network (CNN) model for event classification via fine-tuning AlexNet using EventNet version 1.1. Then we use the trained CNN model to extract FC7 layer feature and train binary classifiers using linear SVM for each event-specific concept. We believe this new version of EventNet will significantly facilitate research in computer vision and multimedia, and will put it online for public downloading in the future.
We exam various geometric active contour methods for radar image segmentation. Due to special properties of radar images, we propose our new model based on modified Chan-Vese functional. Our method is efficient in separating non-meteorological noises from meteorological images.
Approximately 2,500 weights and corresponding images of harvested Lates calcarifer (Asian seabass or barramundi) were collected at three different locations in Queensland, Australia. Two instances of the LinkNet-34 segmentation Convolutional Neural Network (CNN) were trained. The first one was trained on 200 manually segmented fish masks with excluded fins and tails. The second was trained on 100 whole-fish masks. The two CNNs were applied to the rest of the images and yielded automatically segmented masks. The one-factor and two-factor simple mathematical weight-from-area models were fitted on 1072 area-weight pairs from the first two locations, where area values were extracted from the automatically segmented masks. When applied to 1,400 test images (from the third location), the one-factor whole-fish mask model achieved the best mean absolute percentage error (MAPE), MAPE=4.36%. Direct weight-from-image regression CNNs were also trained, where the no-fins based CNN performed best on the test images with MAPE=4.28%.
Automatic map extraction is of great importance to urban computing and location-based services. Aerial image and GPS trajectory data refer to two different data sources that could be leveraged to generate the map, although they carry different types of information. Most previous works on data fusion between aerial images and data from auxiliary sensors do not fully utilize the information of both modalities and hence suffer from the issue of information loss. We propose a deep convolutional neural network called DeepDualMapper which fuses the aerial image and trajectory data in a more seamless manner to extract the digital map. We design a gated fusion module to explicitly control the information flows from both modalities in a complementary-aware manner. Moreover, we propose a novel densely supervised refinement decoder to generate the prediction in a coarse-to-fine way. Our comprehensive experiments demonstrate that DeepDualMapper can fuse the information of images and trajectories much more effectively than existing approaches, and is able to generate maps with higher accuracy.
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