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Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction

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 Added by Peichao Li
 Publication date 2021
and research's language is English




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Hyperspectral imaging is one of the most promising techniques for intraoperative tissue characterisation. Snapshot mosaic cameras, which can capture hyperspectral data in a single exposure, have the potential to make a real-time hyperspectral imaging system for surgical decision-making possible. However, optimal exploitation of the captured data requires solving an ill-posed demosaicking problem and applying additional spectral corrections to recover spatial and spectral information of the image. In this work, we propose a deep learning-based image demosaicking algorithm for snapshot hyperspectral images using supervised learning methods. Due to the lack of publicly available medical images acquired with snapshot mosaic cameras, a synthetic image generation approach is proposed to simulate snapshot images from existing medical image datasets captured by high-resolution, but slow, hyperspectral imaging devices. Image reconstruction is achieved using convolutional neural networks for hyperspectral image super-resolution, followed by cross-talk and leakage correction using a sensor-specific calibration matrix. The resulting demosaicked images are evaluated both quantitatively and qualitatively, showing clear improvements in image quality compared to a baseline demosaicking method using linear interpolation. Moreover, the fast processing time of~45,ms of our algorithm to obtain super-resolved RGB or oxygenation saturation maps per image frame for a state-of-the-art snapshot mosaic camera demonstrates the potential for its seamless integration into real-time surgical hyperspectral imaging applications.



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Hyperspectral images are of crucial importance in order to better understand features of different materials. To reach this goal, they leverage on a high number of spectral bands. However, this interesting characteristic is often paid by a reduced spatial resolution compared with traditional multispectral image systems. In order to alleviate this issue, in this work, we propose a simple and efficient architecture for deep convolutional neural networks to fuse a low-resolution hyperspectral image (LR-HSI) and a high-resolution multispectral image (HR-MSI), yielding a high-resolution hyperspectral image (HR-HSI). The network is designed to preserve both spatial and spectral information thanks to an architecture from two folds: one is to utilize the HR-HSI at a different scale to get an output with a satisfied spectral preservation; another one is to apply concepts of multi-resolution analysis to extract high-frequency information, aiming to output high quality spatial details. Finally, a plain mean squared error loss function is used to measure the performance during the training. Extensive experiments demonstrate that the proposed network architecture achieves best performance (both qualitatively and quantitatively) compared with recent state-of-the-art hyperspectral image super-resolution approaches. Moreover, other significant advantages can be pointed out by the use of the proposed approach, such as, a better network generalization ability, a limited computational burden, and a robustness with respect to the number of training samples.
Hyperspectral image (HSI) contains both spatial pattern and spectral information which has been widely used in food safety, remote sensing, and medical detection. However, the acquisition of hyperspectral images is usually costly due to the complicated apparatus for the acquisition of optical spectrum. Recently, it has been reported that HSI can be reconstructed from single RGB image using convolution neural network (CNN) algorithms. Compared with the traditional hyperspectral cameras, the method based on CNN algorithms is simple, portable and low cost. In this study, we focused on the influence of the RGB camera spectral sensitivity (CSS) on the HSI. A Xenon lamp incorporated with a monochromator were used as the standard light source to calibrate the CSS. And the experimental results show that the CSS plays a significant role in the reconstruction accuracy of an HSI. In addition, we proposed a new HSI reconstruction network where the dimensional structure of the original hyperspectral datacube was modified by 3D matrix transpose to improve the reconstruction accuracy.
Hyperspectral compressive imaging takes advantage of compressive sensing theory to achieve coded aperture snapshot measurement without temporal scanning, and the entire three-dimensional spatial-spectral data is captured by a two-dimensional projection during a single integration period. Its core issue is how to reconstruct the underlying hyperspectral image using compressive sensing reconstruction algorithms. Due to the diversity in the spectral response characteristics and wavelength range of different spectral imaging devices, previous works are often inadequate to capture complex spectral variations or lack the adaptive capacity to new hyperspectral imagers. In order to address these issues, we propose an unsupervised spatial-spectral network to reconstruct hyperspectral images only from the compressive snapshot measurement. The proposed network acts as a conditional generative model conditioned on the snapshot measurement, and it exploits the spatial-spectral attention module to capture the joint spatial-spectral correlation of hyperspectral images. The network parameters are optimized to make sure that the network output can closely match the given snapshot measurement according to the imaging model, thus the proposed network can adapt to different imaging settings, which can inherently enhance the applicability of the network. Extensive experiments upon multiple datasets demonstrate that our network can achieve better reconstruction results than the state-of-the-art methods.
The study of 3D hyperspectral image (HSI) reconstruction refers to the inverse process of snapshot compressive imaging, during which the optical system, e.g., the coded aperture snapshot spectral imaging (CASSI) system, captures the 3D spatial-spectral signal and encodes it to a 2D measurement. While numerous sophisticated neural networks have been elaborated for end-to-end reconstruction, trade-offs still need to be made among performance, efficiency (training and inference time), and feasibility (the ability of restoring high resolution HSI on limited GPU memory). This raises a challenge to design a new baseline to conjointly meet the above requirements. In this paper, we fill in this blank by proposing a Spatial/Spectral Invariant Residual U-Net, namely SSI-ResU-Net. It differentiates with U-Net in three folds--1) scale/spectral-invariant learning, 2) nested residual learning, and 3) computational efficiency. Benefiting from these three modules, the proposed SSI-ResU-Net outperforms the current state-of-the-art method TSA-Net by over 3 dB in PSNR and 0.036 in SSIM while only using 2.82% trainable parameters. To the greatest extent, SSI-ResU-Net achieves competing performance with over 77.3% reduction in terms of floating-point operations (FLOPs), which for the first time, makes high-resolution HSI reconstruction feasible under practical application scenarios. Code and pre-trained models are made available at https://github.com/Jiamian-Wang/HSI_baseline.
Band selection refers to the process of choosing the most relevant bands in a hyperspectral image. By selecting a limited number of optimal bands, we aim at speeding up model training, improving accuracy, or both. It reduces redundancy among spectral bands while trying to preserve the original information of the image. By now many efforts have been made to develop unsupervised band selection approaches, of which the majority are heuristic algorithms devised by trial and error. In this paper, we are interested in training an intelligent agent that, given a hyperspectral image, is capable of automatically learning policy to select an optimal band subset without any hand-engineered reasoning. To this end, we frame the problem of unsupervised band selection as a Markov decision process, propose an effective method to parameterize it, and finally solve the problem by deep reinforcement learning. Once the agent is trained, it learns a band-selection policy that guides the agent to sequentially select bands by fully exploiting the hyperspectral image and previously picked bands. Furthermore, we propose two different reward schemes for the environment simulation of deep reinforcement learning and compare them in experiments. This, to the best of our knowledge, is the first study that explores a deep reinforcement learning model for hyperspectral image analysis, thus opening a new door for future research and showcasing the great potential of deep reinforcement learning in remote sensing applications. Extensive experiments are carried out on four hyperspectral data sets, and experimental results demonstrate the effectiveness of the proposed method.
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