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Register a new userA New Backbone for Hyperspectral Image Reconstruction
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The study of 3D hyperspectral image (HSI) reconstruction refers to the inverse process of snapshot compressive imaging, during which the optical system, e.g., the coded aperture snapshot spectral imaging (CASSI) system, captures the 3D spatial-spectral signal and encodes it to a 2D measurement. While numerous sophisticated neural networks have been elaborated for end-to-end reconstruction, trade-offs still need to be made among performance, efficiency (training and inference time), and feasibility (the ability of restoring high resolution HSI on limited GPU memory). This raises a challenge to design a new baseline to conjointly meet the above requirements. In this paper, we fill in this blank by proposing a Spatial/Spectral Invariant Residual U-Net, namely SSI-ResU-Net. It differentiates with U-Net in three folds--1) scale/spectral-invariant learning, 2) nested residual learning, and 3) computational efficiency. Benefiting from these three modules, the proposed SSI-ResU-Net outperforms the current state-of-the-art method TSA-Net by over 3 dB in PSNR and 0.036 in SSIM while only using 2.82% trainable parameters. To the greatest extent, SSI-ResU-Net achieves competing performance with over 77.3% reduction in terms of floating-point operations (FLOPs), which for the first time, makes high-resolution HSI reconstruction feasible under practical application scenarios. Code and pre-trained models are made available at https://github.com/Jiamian-Wang/HSI_baseline.
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Hyperspectral imaging is one of the most promising techniques for intraoperative tissue characterisation. Snapshot mosaic cameras, which can capture hyperspectral data in a single exposure, have the potential to make a real-time hyperspectral imaging system for surgical decision-making possible. However, optimal exploitation of the captured data requires solving an ill-posed demosaicking problem and applying additional spectral corrections to recover spatial and spectral information of the image. In this work, we propose a deep learning-based image demosaicking algorithm for snapshot hyperspectral images using supervised learning methods. Due to the lack of publicly available medical images acquired with snapshot mosaic cameras, a synthetic image generation approach is proposed to simulate snapshot images from existing medical image datasets captured by high-resolution, but slow, hyperspectral imaging devices. Image reconstruction is achieved using convolutional neural networks for hyperspectral image super-resolution, followed by cross-talk and leakage correction using a sensor-specific calibration matrix. The resulting demosaicked images are evaluated both quantitatively and qualitatively, showing clear improvements in image quality compared to a baseline demosaicking method using linear interpolation. Moreover, the fast processing time of~45,ms of our algorithm to obtain super-resolved RGB or oxygenation saturation maps per image frame for a state-of-the-art snapshot mosaic camera demonstrates the potential for its seamless integration into real-time surgical hyperspectral imaging applications.
Hyperspectral imaging (HSI) unlocks the huge potential to a wide variety of applications relied on high-precision pathology image segmentation, such as computational pathology and precision medicine. Since hyperspectral pathology images benefit from the rich and detailed spectral information even beyond the visible spectrum, the key to achieve high-precision hyperspectral pathology image segmentation is to felicitously model the context along high-dimensional spectral bands. Inspired by the strong context modeling ability of transformers, we hereby, for the first time, formulate the contextual feature learning across spectral bands for hyperspectral pathology image segmentation as a sequence-to-sequence prediction procedure by transformers. To assist spectral context learning procedure, we introduce two important strategies: (1) a sparsity scheme enforces the learned contextual relationship to be sparse, so as to eliminates the distraction from the redundant bands; (2) a spectral normalization, a separate group normalization for each spectral band, mitigates the nuisance caused by heterogeneous underlying distributions of bands. We name our method Spectral Transformer (SpecTr), which enjoys two benefits: (1) it has a strong ability to model long-range dependency among spectral bands, and (2) it jointly explores the spatial-spectral features of HSI. Experiments show that SpecTr outperforms other competing methods in a hyperspectral pathology image segmentation benchmark without the need of pre-training. Code is available at https://github.com/hfut-xc-yun/SpecTr.
Hyperspectral compressive imaging takes advantage of compressive sensing theory to achieve coded aperture snapshot measurement without temporal scanning, and the entire three-dimensional spatial-spectral data is captured by a two-dimensional projection during a single integration period. Its core issue is how to reconstruct the underlying hyperspectral image using compressive sensing reconstruction algorithms. Due to the diversity in the spectral response characteristics and wavelength range of different spectral imaging devices, previous works are often inadequate to capture complex spectral variations or lack the adaptive capacity to new hyperspectral imagers. In order to address these issues, we propose an unsupervised spatial-spectral network to reconstruct hyperspectral images only from the compressive snapshot measurement. The proposed network acts as a conditional generative model conditioned on the snapshot measurement, and it exploits the spatial-spectral attention module to capture the joint spatial-spectral correlation of hyperspectral images. The network parameters are optimized to make sure that the network output can closely match the given snapshot measurement according to the imaging model, thus the proposed network can adapt to different imaging settings, which can inherently enhance the applicability of the network. Extensive experiments upon multiple datasets demonstrate that our network can achieve better reconstruction results than the state-of-the-art methods.
This paper presents a tensor alignment (TA) based domain adaptation method for hyperspectral image (HSI) classification. To be specific, HSIs in both domains are first segmented into superpixels and tensors of both domains are constructed to include neighboring samples from single superpixel. Then we consider the subspace invariance between two domains as projection matrices and original tensors are projected as core tensors with lower dimensions into the invariant tensor subspace by applying Tucker decomposition. To preserve geometric information in original tensors, we employ a manifold regularization term for core tensors into the decomposition progress. The projection matrices and core tensors are solved in an alternating optimization manner and the convergence of TA algorithm is analyzed. In addition, a post-processing strategy is defined via pure samples extraction for each superpixel to further improve classification performance. Experimental results on four real HSIs demonstrate that the proposed method can achieve better performance compared with the state-of-the-art subspace learning methods when a limited amount of source labeled samples are available.
Deep learning methods have shown considerable potential for hyperspectral image (HSI) classification, which can achieve high accuracy compared with traditional methods. However, they often need a large number of training samples and have a lot of parameters and high computational overhead. To solve these problems, this paper proposes a new network architecture, LiteDepthwiseNet, for HSI classification. Based on 3D depthwise convolution, LiteDepthwiseNet can decompose standard convolution into depthwise convolution and pointwise convolution, which can achieve high classification performance with minimal parameters. Moreover, we remove the ReLU layer and Batch Normalization layer in the original 3D depthwise convolution, which significantly improves the overfitting phenomenon of the model on small sized datasets. In addition, focal loss is used as the loss function to improve the models attention on difficult samples and unbalanced data, and its training performance is significantly better than that of cross-entropy loss or balanced cross-entropy loss. Experiment results on three benchmark hyperspectral datasets show that LiteDepthwiseNet achieves state-of-the-art performance with a very small number of parameters and low computational cost.
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