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Register a new userMulti-path Convolutional Neural Networks Efficiently Improve Feature Extraction in Continuous Adventitious Lung Sound Detection
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Added by
Chien-Wen Huang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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We previously established a large lung sound database, HF_Lung_V2 (Lung_V2). We trained convolutional-bidirectional gated recurrent unit (CNN-BiGRU) networks for detecting inhalation, exhalation, continuous adventitious sound (CAS) and discontinuous adventitious sound at the recording level on the basis of Lung_V2. However, the performance of CAS detection was poor due to many reasons, one of which is the highly diversified CAS patterns. To make the original CNN-BiGRU model learn the CAS patterns more effectively and not cause too much computing burden, three strategies involving minimal modifications of the network architecture of the CNN layers were investigated: (1) making the CNN layers a bit deeper by using the residual blocks, (2) making the CNN layers a bit wider by increasing the number of CNN kernels, and (3) separating the feature input into multiple paths (the model was denoted by Multi-path CNN-BiGRU). The performance of CAS segment and event detection were evaluated. Results showed that improvement in CAS detection was observed among all the proposed architecture-modified models. The F1 score for CAS event detection of the proposed models increased from 0.445 to 0.491-0.530, which was deemed significant. However, the Multi-path CNN-BiGRU model outperformed the other models in terms of the number of winning titles (five) in total nine evaluation metrics. In addition, the Multi-path CNN-BiGRU model did not cause extra computing burden (0.97-fold inference time) compared to the original CNN-BiGRU model. Conclusively, the Multi-path CNN layers can efficiently improve the effectiveness of feature extraction and subsequently result in better CAS detection.
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Previously, we established a lung sound database, HF_Lung_V2 and proposed convolutional bidirectional gated recurrent unit (CNN-BiGRU) models with adequate ability for inhalation, exhalation, continuous adventitious sound (CAS), and discontinuous adventitious sound detection in the lung sound. In this study, we proceeded to build a tracheal sound database, HF_Tracheal_V1, containing 11107 of 15-second tracheal sound recordings, 23087 inhalation labels, 16728 exhalation labels, and 6874 CAS labels. The tracheal sound in HF_Tracheal_V1 and the lung sound in HF_Lung_V2 were either combined or used alone to train the CNN-BiGRU models for respective lung and tracheal sound analysis. Different training strategies were investigated and compared: (1) using full training (training from scratch) to train the lung sound models using lung sound alone and train the tracheal sound models using tracheal sound alone, (2) using a mixed set that contains both the lung and tracheal sound to train the models, and (3) using domain adaptation that finetuned the pre-trained lung sound models with the tracheal sound data and vice versa. Results showed that the models trained only by lung sound performed poorly in the tracheal sound analysis and vice versa. However, the mixed set training and domain adaptation can improve the performance of exhalation and CAS detection in the lung sound, and inhalation, exhalation, and CAS detection in the tracheal sound compared to positive controls (lung models trained only by lung sound and vice versa). Especially, a model derived from the mixed set training prevails in the situation of killing two birds with one stone.
We propose the multi-head convolutional neural network (MCNN) architecture for waveform synthesis from spectrograms. Nonlinear interpolation in MCNN is employed with transposed convolution layers in parallel heads. MCNN achieves more than an order of magnitude higher compute intensity than commonly-used iterative algorithms like Griffin-Lim, yielding efficient utilization for modern multi-core processors, and very fast (more than 300x real-time) waveform synthesis. For training of MCNN, we use a large-scale speech recognition dataset and losses defined on waveforms that are related to perceptual audio quality. We demonstrate that MCNN constitutes a very promising approach for high-quality speech synthesis, without any iterative algorithms or autoregression in computations.
Abdominal auscultation is a convenient, safe and inexpensive method to assess bowel conditions, which is essential in neonatal care. It helps early detection of neonatal bowel dysfunctions and allows timely intervention. This paper presents a neonatal bowel sound detection method to assist the auscultation. Specifically, a Convolutional Neural Network (CNN) is proposed to classify peristalsis and non-peristalsis sounds. The classification is then optimized using a Laplace Hidden Semi-Markov Model (HSMM). The proposed method is validated on abdominal sounds from 49 newborn infants admitted to our tertiary Neonatal Intensive Care Unit (NICU). The results show that the method can effectively detect bowel sounds with accuracy and area under curve (AUC) score being 89.81% and 83.96% respectively, outperforming 13 baseline methods. Furthermore, the proposed Laplace HSMM refinement strategy is proven capable to enhance other bowel sound detection models. The outcomes of this work have the potential to facilitate future telehealth applications for neonatal care. The source code of our work can be found at: https://bitbucket.org/chirudeakin/neonatal-bowel-sound-classification/
Audio classification using breath and cough samples has recently emerged as a low-cost, non-invasive, and accessible COVID-19 screening method. However, no application has been approved for official use at the time of writing due to the stringent reliability and accuracy requirements of the critical healthcare setting. To support the development of the Machine Learning classification models, we performed an extensive comparative investigation and ranking of 15 audio features, including less well-known ones. The results were verified on two independent COVID-19 sound datasets. By using the identified top-performing features, we have increased the COVID-19 classification accuracy by up to 17% on the Cambridge dataset, and up to 10% on the Coswara dataset, compared to the original baseline accuracy without our feature ranking.
A reliable, remote, and continuous real-time respiratory sound monitor with automated respiratory sound analysis ability is urgently required in many clinical scenarios-such as in monitoring disease progression of coronavirus disease 2019-to replace conventional auscultation with a handheld stethoscope. However, a robust computerized respiratory sound analysis algorithm has not yet been validated in practical applications. In this study, we developed a lung sound database (HF_Lung_V1) comprising 9,765 audio files of lung sounds (duration of 15 s each), 34,095 inhalation labels, 18,349 exhalation labels, 13,883 continuous adventitious sound (CAS) labels (comprising 8,457 wheeze labels, 686 stridor labels, and 4,740 rhonchi labels), and 15,606 discontinuous adventitious sound labels (all crackles). We conducted benchmark tests for long short-term memory (LSTM), gated recurrent unit (GRU), bidirectional LSTM (BiLSTM), bidirectional GRU (BiGRU), convolutional neural network (CNN)-LSTM, CNN-GRU, CNN-BiLSTM, and CNN-BiGRU models for breath phase detection and adventitious sound detection. We also conducted a performance comparison between the LSTM-based and GRU-based models, between unidirectional and bidirectional models, and between models with and without a CNN. The results revealed that these models exhibited adequate performance in lung sound analysis. The GRU-based models outperformed, in terms of F1 scores and areas under the receiver operating characteristic curves, the LSTM-based models in most of the defined tasks. Furthermore, all bidirectional models outperformed their unidirectional counterparts. Finally, the addition of a CNN improved the accuracy of lung sound analysis, especially in the CAS detection tasks.
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