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Register a new userGeneralized Unsupervised Clustering of Hyperspectral Images of Geological Targets in the Near Infrared
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The application of infrared hyperspectral imagery to geological problems is becoming more popular as data become more accessible and cost-effective. Clustering and classifying spectrally similar materials is often a first step in applications ranging from economic mineral exploration on Earth to planetary exploration on Mars. Semi-manual classification guided by expertly developed spectral parameters can be time consuming and biased, while supervised methods require abundant labeled data and can be difficult to generalize. Here we develop a fully unsupervised workflow for feature extraction and clustering informed by both expert spectral geologist input and quantitative metrics. Our pipeline uses a lightweight autoencoder followed by Gaussian mixture modeling to map the spectral diversity within any image. We validate the performance of our pipeline at submillimeter-scale with expert-labelled data from the Oman ophiolite drill core and evaluate performance at meters-scale with partially classified orbital data of Jezero Crater on Mars (the landing site for the Perseverance rover). We additionally examine the effects of various preprocessing techniques used in traditional analysis of hyperspectral imagery. This pipeline provides a fast and accurate clustering map of similar geological materials and consistently identifies and separates major mineral classes in both laboratory imagery and remote sensing imagery. We refer to our pipeline as Generalized Pipeline for Spectroscopic Unsupervised clustering of Minerals (GyPSUM).
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A novel method, utilizing convolutional neural networks (CNNs), is proposed to reconstruct hyperspectral cubes from computed tomography imaging spectrometer (CTIS) images. Current reconstruction algorithms are usually subject to long reconstruction times and mediocre precision in cases of a large number of spectral channels. The constructed CNNs deliver higher precision and shorter reconstruction time than a standard expectation maximization algorithm. In addition, the network can handle two different types of real-world images at the same time -- specifically ColorChecker and carrot spectral images are considered. This work paves the way toward real-time reconstruction of hyperspectral cubes from CTIS images.
In this work, a novel target detector for hyperspectral imagery is developed. The detector is independent on the unknown covariance matrix, behaves well in large dimensions, distributional free, invariant to atmospheric effects, and does not require a background dictionary to be constructed. Based on a modification of the robust principal component analysis (RPCA), a given hyperspectral image (HSI) is regarded as being made up of the sum of a low-rank background HSI and a sparse target HSI that contains the targets based on a pre-learned target dictionary specified by the user. The sparse component is directly used for the detection, that is, the targets are simply detected at the non-zero entries of the sparse target HSI. Hence, a novel target detector is developed, which is simply a sparse HSI generated automatically from the original HSI, but containing only the targets with the background is suppressed. The detector is evaluated on real experiments, and the results of which demonstrate its effectiveness for hyperspectral target detection especially when the targets are well matched to the surroundings.
Clustering algorithms partition a dataset into groups of similar points. The primary contribution of this article is the Multiscale Spatially-Regularized Diffusion Learning (M-SRDL) clustering algorithm, which uses spatially-regularized diffusion distances to efficiently and accurately learn multiple scales of latent structure in hyperspectral images (HSI). The M-SRDL clustering algorithm extracts clusterings at many scales from an HSI and outputs these clusterings variation of information-barycenter as an exemplar for all underlying cluster structure. We show that incorporating spatial regularization into a multiscale clustering framework corresponds to smoother and more coherent clusters when applied to HSI data and leads to more accurate clustering labels.
Sepsis is a leading cause of mortality and critical illness worldwide. While robust biomarkers for early diagnosis are still missing, recent work indicates that hyperspectral imaging (HSI) has the potential to overcome this bottleneck by monitoring microcirculatory alterations. Automated machine learning-based diagnosis of sepsis based on HSI data, however, has not been explored to date. Given this gap in the literature, we leveraged an existing data set to (1) investigate whether HSI-based automated diagnosis of sepsis is possible and (2) put forth a list of possible confounders relevant for HSI-based tissue classification. While we were able to classify sepsis with an accuracy of over $98,%$ using the existing data, our research also revealed several subject-, therapy- and imaging-related confounders that may lead to an overestimation of algorithm performance when not balanced across the patient groups. We conclude that further prospective studies, carefully designed with respect to these confounders, are necessary to confirm the preliminary results obtained in this study.
Image denoising is often empowered by accurate prior information. In recent years, data-driven neural network priors have shown promising performance for RGB natural image denoising. Compared to classic handcrafted priors (e.g., sparsity and total variation), the deep priors are learned using a large number of training samples -- which can accurately model the complex image generating process. However, data-driven priors are hard to acquire for hyperspectral images (HSIs) due to the lack of training data. A remedy is to use the so-called unsupervised deep image prior (DIP). Under the unsupervised DIP framework, it is hypothesized and empirically demonstrated that proper neural network structures are reasonable priors of certain types of images, and the network weights can be learned without training data. Nonetheless, the most effective unsupervised DIP structures were proposed for natural images instead of HSIs. The performance of unsupervised DIP-based HSI denoising is limited by a couple of serious challenges, namely, network structure design and network complexity. This work puts forth an unsupervised DIP framework that is based on the classic spatio-spectral decomposition of HSIs. Utilizing the so-called linear mixture model of HSIs, two types of unsupervised DIPs, i.e., U-Net-like network and fully-connected networks, are employed to model the abundance maps and endmembers contained in the HSIs, respectively. This way, empirically validated unsupervised DIP structures for natural images can be easily incorporated for HSI denoising. Besides, the decomposition also substantially reduces network complexity. An efficient alternating optimization algorithm is proposed to handle the formulated denoising problem. Semi-real and real data experiments are employed to showcase the effectiveness of the proposed approach.
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