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Register a new userA Spiking Neural Network for Image Segmentation
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Kinjal Pravinbhai Patel Ms
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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We seek to investigate the scalability of neuromorphic computing for computer vision, with the objective of replicating non-neuromorphic performance on computer vision tasks while reducing power consumption. We convert the deep Artificial Neural Network (ANN) architecture U-Net to a Spiking Neural Network (SNN) architecture using the Nengo framework. Both rate-based and spike-based models are trained and optimized for benchmarking performance and power, using a modified version of the ISBI 2D EM Segmentation dataset consisting of microscope images of cells. We propose a partitioning method to optimize inter-chip communication to improve speed and energy efficiency when deploying multi-chip networks on the Loihi neuromorphic chip. We explore the advantages of regularizing firing rates of Loihi neurons for converting ANN to SNN with minimum accuracy loss and optimized energy consumption. We propose a percentile based regularization loss function to limit the spiking rate of the neuron between a desired range. The SNN is converted directly from the corresponding ANN, and demonstrates similar semantic segmentation as the ANN using the same number of neurons and weights. However, the neuromorphic implementation on the Intel Loihi neuromorphic chip is over 2x more energy-efficient than conventional hardware (CPU, GPU) when running online (one image at a time). These power improvements are achieved without sacrificing the task performance accuracy of the network, and when all weights (Loihi, CPU, and GPU networks) are quantized to 8 bits.
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Spiking neural networks (SNNs) has attracted much attention due to its great potential of modeling time-dependent signals. The firing rate of spiking neurons is decided by control rate which is fixed manually in advance, and thus, whether the firing rate is adequate for modeling actual time series relies on fortune. Though it is demanded to have an adaptive control rate, it is a non-trivial task because the control rate and the connection weights learned during the training process are usually entangled. In this paper, we show that the firing rate is related to the eigenvalue of the spike generation function. Inspired by this insight, by enabling the spike generation function to have adaptable eigenvalues rather than parametric control rates, we develop the Bifurcation Spiking Neural Network (BSNN), which has an adaptive firing rate and is insensitive to the setting of control rates. Experiments validate the effectiveness of BSNN on a broad range of tasks, showing that BSNN achieves superior performance to existing SNNs and is robust to the setting of control rates.
Computation using brain-inspired spiking neural networks (SNNs) with neuromorphic hardware may offer orders of magnitude higher energy efficiency compared to the current analog neural networks (ANNs). Unfortunately, training SNNs with the same number of layers as state of the art ANNs remains a challenge. To our knowledge the only method which is successful in this regard is supervised training of ANN and then converting it to SNN. In this work we directly train deep SNNs using backpropagation with surrogate gradient and find that due to implicitly recurrent nature of feed forward SNNs the exploding or vanishing gradient problem severely hinders their training. We show that this problem can be solved by tuning the surrogate gradient function. We also propose using batch normalization from ANN literature on input currents of SNN neurons. Using these improvements we show that is is possible to train SNN with ResNet50 architecture on CIFAR100 and Imagenette object recognition datasets. The trained SNN falls behind in accuracy compared to analogous ANN but requires several orders of magnitude less inference time steps (as low as 10) to reach good accuracy compared to SNNs obtained by conversion from ANN which require on the order of 1000 time steps.
A novel coronavirus disease 2019 (COVID-19) was detected and has spread rapidly across various countries around the world since the end of the year 2019, Computed Tomography (CT) images have been used as a crucial alternative to the time-consuming RT-PCR test. However, pure manual segmentation of CT images faces a serious challenge with the increase of suspected cases, resulting in urgent requirements for accurate and automatic segmentation of COVID-19 infections. Unfortunately, since the imaging characteristics of the COVID-19 infection are diverse and similar to the backgrounds, existing medical image segmentation methods cannot achieve satisfactory performance. In this work, we try to establish a new deep convolutional neural network tailored for segmenting the chest CT images with COVID-19 infections. We firstly maintain a large and new chest CT image dataset consisting of 165,667 annotated chest CT images from 861 patients with confirmed COVID-19. Inspired by the observation that the boundary of the infected lung can be enhanced by adjusting the global intensity, in the proposed deep CNN, we introduce a feature variation block which adaptively adjusts the global properties of the features for segmenting COVID-19 infection. The proposed FV block can enhance the capability of feature representation effectively and adaptively for diverse cases. We fuse features at different scales by proposing Progressive Atrous Spatial Pyramid Pooling to handle the sophisticated infection areas with diverse appearance and shapes. We conducted experiments on the data collected in China and Germany and show that the proposed deep CNN can produce impressive performance effectively.
The purpose of this study was to develop a fully-automated segmentation algorithm, robust to various density enhancing lung abnormalities, to facilitate rapid quantitative analysis of computed tomography images. A polymorphic training approach is proposed, in which both specifically labeled left and right lungs of humans with COPD, and nonspecifically labeled lungs of animals with acute lung injury, were incorporated into training a single neural network. The resulting network is intended for predicting left and right lung regions in humans with or without diffuse opacification and consolidation. Performance of the proposed lung segmentation algorithm was extensively evaluated on CT scans of subjects with COPD, confirmed COVID-19, lung cancer, and IPF, despite no labeled training data of the latter three diseases. Lobar segmentations were obtained using the left and right lung segmentation as input to the LobeNet algorithm. Regional lobar analysis was performed using hierarchical clustering to identify radiographic subtypes of COVID-19. The proposed lung segmentation algorithm was quantitatively evaluated using semi-automated and manually-corrected segmentations in 87 COVID-19 CT images, achieving an average symmetric surface distance of $0.495 pm 0.309$ mm and Dice coefficient of $0.985 pm 0.011$. Hierarchical clustering identified four radiographical phenotypes of COVID-19 based on lobar fractions of consolidated and poorly aerated tissue. Lower left and lower right lobes were consistently more afflicted with poor aeration and consolidation. However, the most severe cases demonstrated involvement of all lobes. The polymorphic training approach was able to accurately segment COVID-19 cases with diffuse consolidation without requiring COVID-19 cases for training.
Tactile perception is crucial for a variety of robot tasks including grasping and in-hand manipulation. New advances in flexible, event-driven, electronic skins may soon endow robots with touch perception capabilities similar to humans. These electronic skins respond asynchronously to changes (e.g., in pressure, temperature), and can be laid out irregularly on the robots body or end-effector. However, these unique features may render current deep learning approaches such as convolutional feature extractors unsuitable for tactile learning. In this paper, we propose a novel spiking graph neural network for event-based tactile object recognition. To make use of local connectivity of taxels, we present several methods for organizing the tactile data in a graph structure. Based on the constructed graphs, we develop a spiking graph convolutional network. The event-driven nature of spiking neural network makes it arguably more suitable for processing the event-based data. Experimental results on two tactile datasets show that the proposed method outperforms other state-of-the-art spiking methods, achieving high accuracies of approximately 90% when classifying a variety of different household objects.
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