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Register a new userFully Transformer Networks for Semantic Image Segmentation
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Added by
Sitong Wu
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Transformers have shown impressive performance in various natural language processing and computer vision tasks, due to the capability of modeling long-range dependencies. Recent progress has demonstrated to combine such transformers with CNN-based semantic image segmentation models is very promising. However, it is not well studied yet on how well a pure transformer based approach can achieve for image segmentation. In this work, we explore a novel framework for semantic image segmentation, which is encoder-decoder based Fully Transformer Networks (FTN). Specifically, we first propose a Pyramid Group Transformer (PGT) as the encoder for progressively learning hierarchical features, while reducing the computation complexity of the standard visual transformer(ViT). Then, we propose a Feature Pyramid Transformer (FPT) to fuse semantic-level and spatial-level information from multiple levels of the PGT encoder for semantic image segmentation. Surprisingly, this simple baseline can achieve new state-of-the-art results on multiple challenging semantic segmentation benchmarks, including PASCAL Context, ADE20K and COCO-Stuff. The source code will be released upon the publication of this work.
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Semantic segmentation is pixel-wise classification which retains critical spatial information. The feature map reuse has been commonly adopted in CNN based approaches to take advantage of feature maps in the early layers for the later spatial reconstruction. Along this direction, we go a step further by proposing a fully dense neural network with an encoder-decoder structure that we abbreviate as FDNet. For each stage in the decoder module, feature maps of all the previous blocks are adaptively aggregated to feed-forward as input. On the one hand, it reconstructs the spatial boundaries accurately. On the other hand, it learns more efficiently with the more efficient gradient backpropagation. In addition, we propose the boundary-aware loss function to focus more attention on the pixels near the boundary, which boosts the hard examples labeling. We have demonstrated the best performance of the FDNet on the two benchmark datasets: PASCAL VOC 2012, NYUDv2 over previous works when not considering training on other datasets.
Histopathology has played an essential role in cancer diagnosis. With the rapid advances in convolutional neural networks (CNN). Various CNN-based automated pathological image segmentation approaches have been developed in computer-assisted pathological image analysis. In the past few years, Transformer neural networks (Transformer) have shown the unique merit of capturing the global long distance dependencies across the entire image as a new deep learning paradigm. Such merit is appealing for exploring spatially heterogeneous pathological images. However, there have been very few, if any, studies that have systematically evaluated the current Transformer based approaches in pathological image segmentation. To assess the performance of Transformer segmentation models on whole slide images (WSI), we quantitatively evaluated six prevalent transformer-based models on tumor segmentation, using the widely used PAIP liver histopathological dataset. For a more comprehensive analysis, we also compare the transformer-based models with six major traditional CNN-based models. The results show that the Transformer-based models exhibit a general superior performance over the CNN-based models. In particular, Segmenter, Swin-Transformer and TransUNet, all transformer-based, came out as the best performers among the twelve evaluated models.
Image segmentation is often ambiguous at the level of individual image patches and requires contextual information to reach label consensus. In this paper we introduce Segmenter, a transformer model for semantic segmentation. In contrast to convolution-based methods, our approach allows to model global context already at the first layer and throughout the network. We build on the recent Vision Transformer (ViT) and extend it to semantic segmentation. To do so, we rely on the output embeddings corresponding to image patches and obtain class labels from these embeddings with a point-wise linear decoder or a mask transformer decoder. We leverage models pre-trained for image classification and show that we can fine-tune them on moderate sized datasets available for semantic segmentation. The linear decoder allows to obtain excellent results already, but the performance can be further improved by a mask transformer generating class masks. We conduct an extensive ablation study to show the impact of the different parameters, in particular the performance is better for large models and small patch sizes. Segmenter attains excellent results for semantic segmentation. It outperforms the state of the art on both ADE20K and Pascal Context datasets and is competitive on Cityscapes.
With pervasive applications of medical imaging in health-care, biomedical image segmentation plays a central role in quantitative analysis, clinical diagno- sis, and medical intervention. Since manual anno- tation su ers limited reproducibility, arduous e orts, and excessive time, automatic segmentation is desired to process increasingly larger scale histopathological data. Recently, deep neural networks (DNNs), par- ticularly fully convolutional networks (FCNs), have been widely applied to biomedical image segmenta- tion, attaining much improved performance. At the same time, quantization of DNNs has become an ac- tive research topic, which aims to represent weights with less memory (precision) to considerably reduce memory and computation requirements of DNNs while maintaining acceptable accuracy. In this paper, we apply quantization techniques to FCNs for accurate biomedical image segmentation. Unlike existing litera- ture on quantization which primarily targets memory and computation complexity reduction, we apply quan- tization as a method to reduce over tting in FCNs for better accuracy. Speci cally, we focus on a state-of- the-art segmentation framework, suggestive annotation [22], which judiciously extracts representative annota- tion samples from the original training dataset, obtain- ing an e ective small-sized balanced training dataset. We develop two new quantization processes for this framework: (1) suggestive annotation with quantiza- tion for highly representative training samples, and (2) network training with quantization for high accuracy. Extensive experiments on the MICCAI Gland dataset show that both quantization processes can improve the segmentation performance, and our proposed method exceeds the current state-of-the-art performance by up to 1%. In addition, our method has a reduction of up to 6.4x on memory usage.
Semantic segmentation is a challenging problem due to difficulties in modeling context in complex scenes and class confusions along boundaries. Most literature either focuses on context modeling or boundary refinement, which is less generalizable in open-world scenarios. In this work, we advocate a unified framework(UN-EPT) to segment objects by considering both context information and boundary artifacts. We first adapt a sparse sampling strategy to incorporate the transformer-based attention mechanism for efficient context modeling. In addition, a separate spatial branch is introduced to capture image details for boundary refinement. The whole model can be trained in an end-to-end manner. We demonstrate promising performance on three popular benchmarks for semantic segmentation with low memory footprint. Code will be released soon.
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