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Register a new userThe scale transformed power prior for use with historical data from a different outcome model
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Added by
Brady Nifong
Publication date
2021
fields
Mathematical Statistics
and research's language is
English
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We develop the scale transformed power prior for settings where historical and current data involve different data types, such as binary and continuous data, respectively. This situation arises often in clinical trials, for example, when historical data involve binary responses and the current data involve time-to-event or some other type of continuous or discrete outcome. The power prior proposed by Ibrahim and Chen (2000) does not address the issue of different data types. Herein, we develop a new type of power prior, which we call the scale transformed power prior (straPP). The straPP is constructed by transforming the power prior for the historical data by rescaling the parameter using a function of the Fisher information matrices for the historical and current data models, thereby shifting the scale of the parameter vector from that of the historical to that of the current data. Examples are presented to motivate the need for a scale transformation and simulation studies are presented to illustrate the performance advantages of the straPP over the power prior and other informative and non-informative priors. A real dataset from a clinical trial undertaken to study a novel transitional care model for stroke survivors is used to illustrate the methodology.
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Any Bayesian analysis involves combining information represented through different model components, and when different sources of information are in conflict it is important to detect this. Here we consider checking for prior-data conflict in Bayesian models by expanding the prior used for the analysis into a larger family of priors, and considering a marginal likelihood score statistic for the expansion parameter. Consideration of different expansions can be informative about the nature of any conflict, and extensions to hierarchically specified priors and connections with other approaches to prior-data conflict checking are discussed. Implementation in complex situations is illustrated with two applications. The first concerns testing for the appropriateness of a LASSO penalty in shrinkage estimation of coefficients in linear regression. Our method is compared with a recent suggestion in the literature designed to be powerful against alternatives in the exponential power family, and we use this family as the prior expansion for constructing our check. A second application concerns a problem in quantum state estimation, where a multinomial model is considered with physical constraints on the model parameters. In this example, the usefulness of different prior expansions is demonstrated for obtaining checks which are sensitive to different aspects of the prior.
In logistic regression, separation occurs when a linear combination of the predictors can perfectly classify part or all of the observations in the sample, and as a result, finite maximum likelihood estimates of the regression coefficients do not exist. Gelman et al. (2008) recommended independent Cauchy distributions as default priors for the regression coefficients in logistic regression, even in the case of separation, and reported posterior modes in their analyses. As the mean does not exist for the Cauchy prior, a natural question is whether the posterior means of the regression coefficients exist under separation. We prove theorems that provide necessary and sufficient conditions for the existence of posterior means under independent Cauchy priors for the logit link and a general family of link functions, including the probit link. We also study the existence of posterior means under multivariate Cauchy priors. For full Bayesian inference, we develop a Gibbs sampler based on Polya-Gamma data augmentation to sample from the posterior distribution under independent Student-t priors including Cauchy priors, and provide a companion R package in the supplement. We demonstrate empirically that even when the posterior means of the regression coefficients exist under separation, the magnitude of the posterior samples for Cauchy priors may be unusually large, and the corresponding Gibbs sampler shows extremely slow mixing. While alternative algorithms such as the No-U-Turn Sampler in Stan can greatly improve mixing, in order to resolve the issue of extremely heavy tailed posteriors for Cauchy priors under separation, one would need to consider lighter tailed priors such as normal priors or Student-t priors with degrees of freedom larger than one.
Statistical agencies are often asked to produce small area estimates (SAEs) for positively skewed variables. When domain sample sizes are too small to support direct estimators, effects of skewness of the response variable can be large. As such, it is important to appropriately account for the distribution of the response variable given available auxiliary information. Motivated by this issue and in order to stabilize the skewness and achieve normality in the response variable, we propose an area-level log-measurement error model on the response variable. Then, under our proposed modeling framework, we derive an empirical Bayes (EB) predictor of positive small area quantities subject to the covariates containing measurement error. We propose a corresponding mean squared prediction error (MSPE) of EB predictor using both a jackknife and a bootstrap method. We show that the order of the bias is $O(m^{-1})$, where $m$ is the number of small areas. Finally, we investigate the performance of our methodology using both design-based and model-based simulation studies.
A novel aggregation scheme increases power in randomized controlled trials and quasi-experiments when the intervention possesses a robust and well-articulated theory of change. Longitudinal data analyzing interventions often include multiple observations on individuals, some of which may be more likely to manifest a treatment effect than others. An interventions theory of change provides guidance as to which of those observations are best situated to exhibit that treatment effect. Our power-maximizing weighting for repeated-measurements with delayed-effects scheme, PWRD aggregation, converts the theory of change into a test statistic with improved Pitman efficiency, delivering tests with greater statistical power. We illustrate this method on an IES-funded cluster randomized trial testing the efficacy of a reading intervention designed to assist early elementary students at risk of falling behind their peers. The salient theory of change holds program benefits to be delayed and non-uniform, experienced after a students performance stalls. This intervention is not found to have an effect, but the PWRD techniques effect on power is found to be comparable to that of a doubling of (cluster-level) sample size.
Use copula to model dependency of variable extends multivariate gaussian assumption. In this paper we first empirically studied copula regression model with continous response. Both simulation study and real data study are given. Secondly we give a novel copula regression model with binary outcome, and we propose a score gradient estimation algorithms to fit the model. Both simulation study and real data study are given for our model and fitting algorithm.
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