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Register a new userUnsupervised Deep Manifold Attributed Graph Embedding
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Zelin Zang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Unsupervised attributed graph representation learning is challenging since both structural and feature information are required to be represented in the latent space. Existing methods concentrate on learning latent representation via reconstruction tasks, but cannot directly optimize representation and are prone to oversmoothing, thus limiting the applications on downstream tasks. To alleviate these issues, we propose a novel graph embedding framework named Deep Manifold Attributed Graph Embedding (DMAGE). A node-to-node geodesic similarity is proposed to compute the inter-node similarity between the data space and the latent space and then use Bergman divergence as loss function to minimize the difference between them. We then design a new network structure with fewer aggregation to alleviate the oversmoothing problem and incorporate graph structure augmentation to improve the representations stability. Our proposed DMAGE surpasses state-of-the-art methods by a significant margin on three downstream tasks: unsupervised visualization, node clustering, and link prediction across four popular datasets.
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Mining tasks over sequential data, such as clickstreams and gene sequences, require a careful design of embeddings usable by learning algorithms. Recent research in feature learning has been extended to sequential data, where each instance consists of a sequence of heterogeneous items with a variable length. However, many real-world applications often involve attributed sequences, where each instance is composed of both a sequence of categorical items and a set of attributes. In this paper, we study this new problem of attributed sequence embedding, where the goal is to learn the representations of attributed sequences in an unsupervised fashion. This problem is core to many important data mining tasks ranging from user behavior analysis to the clustering of gene sequences. This problem is challenging due to the dependencies between sequences and their associated attributes. We propose a deep multimodal learning framework, called NAS, to produce embeddings of attributed sequences. The embeddings are task independent and can be used on various mining tasks of attributed sequences. We demonstrate the effectiveness of our embeddings of attributed sequences in various unsupervised learning tasks on real-world datasets.
Constructing appropriate representations of molecules lies at the core of numerous tasks such as material science, chemistry and drug designs. Recent researches abstract molecules as attributed graphs and employ graph neural networks (GNN) for molecular representation learning, which have made remarkable achievements in molecular graph modeling. Albeit powerful, current models either are based on local aggregation operations and thus miss higher-order graph properties or focus on only node information without fully using the edge information. For this sake, we propose a Communicative Message Passing Transformer (CoMPT) neural network to improve the molecular graph representation by reinforcing message interactions between nodes and edges based on the Transformer architecture. Unlike the previous transformer-style GNNs that treat molecules as fully connected graphs, we introduce a message diffusion mechanism to leverage the graph connectivity inductive bias and reduce the message enrichment explosion. Extensive experiments demonstrated that the proposed model obtained superior performances (around 4$%$ on average) against state-of-the-art baselines on seven chemical property datasets (graph-level tasks) and two chemical shift datasets (node-level tasks). Further visualization studies also indicated a better representation capacity achieved by our model.
spectral-based subspace learning is a common data preprocessing step in many machine learning pipelines. The main aim is to learn a meaningful low dimensional embedding of the data. However, most subspace learning methods do not take into consideration possible measurement inaccuracies or artifacts that can lead to data with high uncertainty. Thus, learning directly from raw data can be misleading and can negatively impact the accuracy. In this paper, we propose to model artifacts in training data using probability distributions; each data point is represented by a Gaussian distribution centered at the original data point and having a variance modeling its uncertainty. We reformulate the Graph Embedding framework to make it suitable for learning from distributions and we study as special cases the Linear Discriminant Analysis and the Marginal Fisher Analysis techniques. Furthermore, we propose two schemes for modeling data uncertainty based on pair-wise distances in an unsupervised and a supervised contexts.
Knowledge Graph (KG) alignment is to discover the mappings (i.e., equivalent entities, relations, and others) between two KGs. The existing methods can be divided into the embedding-based models, and the conventional reasoning and lexical matching based systems. The former compute the similarity of entities via their cross-KG embeddings, but they usually rely on an ideal supervised learning setting for good performance and lack appropriate reasoning to avoid logically wrong mappings; while the latter address the reasoning issue but are poor at utilizing the KG graph structures and the entity contexts. In this study, we aim at combining the above two solutions and thus propose an iterative framework named PRASE which is based on probabilistic reasoning and semantic embedding. It learns the KG embeddings via entity mappings from a probabilistic reasoning system named PARIS, and feeds the resultant entity mappings and embeddings back into PARIS for augmentation. The PRASE framework is compatible with different embedding-based models, and our experiments on multiple datasets have demonstrated its state-of-the-art performance.
Attributed networks are ubiquitous since a network often comes with auxiliary attribute information e.g. a social network with user profiles. Attributed Network Embedding (ANE) has recently attracted considerable attention, which aims to learn unified low dimensional node embeddings while preserving both structural and attribute information. The resulting node embeddings can then facilitate various network downstream tasks e.g. link prediction. Although there are several ANE methods, most of them cannot deal with incomplete attributed networks with missing links and/or missing node attributes, which often occur in real-world scenarios. To address this issue, we propose a robust ANE method, the general idea of which is to reconstruct a unified denser network by fusing two sources of information for information enhancement, and then employ a random walks based network embedding method for learning node embeddings. The experiments of link prediction, node classification, visualization, and parameter sensitivity analysis on six real-world datasets validate the effectiveness of our method to incomplete attributed networks.
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