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Register a new userDemographic-Guided Attention in Recurrent Neural Networks for Modeling Neuropathophysiological Heterogeneity
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Added by
Nicha Dvornek
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Heterogeneous presentation of a neurological disorder suggests potential differences in the underlying pathophysiological changes that occur in the brain. We propose to model heterogeneous patterns of functional network differences using a demographic-guided attention (DGA) mechanism for recurrent neural network models for prediction from functional magnetic resonance imaging (fMRI) time-series data. The context computed from the DGA head is used to help focus on the appropriate functional networks based on individual demographic information. We demonstrate improved classification on 3 subsets of the ABIDE I dataset used in published studies that have previously produced state-of-the-art results, evaluating performance under a leave-one-site-out cross-validation framework for better generalizeability to new data. Finally, we provide examples of interpreting functional network differences based on individual demographic variables.
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Recurrent neural networks (RNNs) have been applied to a broad range of applications, including natural language processing, drug discovery, and video recognition. Their vulnerability to input perturbation is also known. Aligning with a view from software defect detection, this paper aims to develop a coverage guided testing approach to systematically exploit the internal behaviour of RNNs, with the expectation that such testing can detect defects with high possibility. Technically, the long short term memory network (LSTM), a major class of RNNs, is thoroughly studied. A family of three test metrics are designed to quantify not only the values but also the temporal relations (including both step-wise and bounded-length) exhibited when LSTM processing inputs. A genetic algorithm is applied to efficiently generate test cases. The test metrics and test case generation algorithm are implemented into a tool TestRNN, which is then evaluated on a set of LSTM benchmarks. Experiments confirm that TestRNN has advantages over the state-of-art tool DeepStellar and attack-based defect detection methods, owing to its working with finer temporal semantics and the consideration of the naturalness of input perturbation. Furthermore, TestRNN enables meaningful information to be collected and exhibited for users to understand the testing results, which is an important step towards interpretable neural network testing.
Reducing bit-widths of weights, activations, and gradients of a Neural Network can shrink its storage size and memory usage, and also allow for faster training and inference by exploiting bitwise operations. However, previous attempts for quantization of RNNs show considerable performance degradation when using low bit-width weights and activations. In this paper, we propose methods to quantize the structure of gates and interlinks in LSTM and GRU cells. In addition, we propose balanced quantization methods for weights to further reduce performance degradation. Experiments on PTB and IMDB datasets confirm effectiveness of our methods as performances of our models match or surpass the previous state-of-the-art of quantized RNN.
Neural networks are vulnerable to input perturbations such as additive noise and adversarial attacks. In contrast, human perception is much more robust to such perturbations. The Bayesian brain hypothesis states that human brains use an internal generative model to update the posterior beliefs of the sensory input. This mechanism can be interpreted as a form of self-consistency between the maximum a posteriori (MAP) estimation of an internal generative model and the external environment. Inspired by such hypothesis, we enforce self-consistency in neural networks by incorporating generative recurrent feedback. We instantiate this design on convolutional neural networks (CNNs). The proposed framework, termed Convolutional Neural Networks with Feedback (CNN-F), introduces a generative feedback with latent variables to existing CNN architectures, where consistent predictions are made through alternating MAP inference under a Bayesian framework. In the experiments, CNN-F shows considerably improved adversarial robustness over conventional feedforward CNNs on standard benchmarks.
Existing uncertainty modeling approaches try to detect an out-of-distribution point from the in-distribution dataset. We extend this argument to detect finer-grained uncertainty that distinguishes between (a). certain points, (b). uncertain points but within the data distribution, and (c). out-of-distribution points. Our method corrects overconfident NN decisions, detects outlier points and learns to say ``I dont know when uncertain about a critical point between the top two predictions. In addition, we provide a mechanism to quantify class distributions overlap in the decision manifold and investigate its implications in model interpretability. Our method is two-step: in the first step, the proposed method builds a class distribution using Kernel Activation Vectors (kav) extracted from the Network. In the second step, the algorithm determines the confidence of a test point by a hierarchical decision rule based on the chi-squared distribution of squared Mahalanobis distances. Our method sits on top of a given Neural Network, requires a single scan of training data to estimate class distribution statistics, and is highly scalable to deep networks and wider pre-softmax layer. As a positive side effect, our method helps to prevent adversarial attacks without requiring any additional training. It is directly achieved when the Softmax layer is substituted by our robust uncertainty layer at the evaluation phase.
We consider a setting where multiple entities inter-act with each other over time and the time-varying statuses of the entities are represented as multiple correlated time series. For example, speed sensors are deployed in different locations in a road network, where the speed of a specific location across time is captured by the corresponding sensor as a time series, resulting in multiple speed time series from different locations, which are often correlated. To enable accurate forecasting on correlated time series, we proposes graph attention recurrent neural networks.First, we build a graph among different entities by taking into account spatial proximity and employ a multi-head attention mechanism to derive adaptive weight matrices for the graph to capture the correlations among vertices (e.g., speeds at different locations) at different timestamps. Second, we employ recurrent neural networks to take into account temporal dependency while taking into account the adaptive weight matrices learned from the first step to consider the correlations among time series.Experiments on a large real-world speed time series data set suggest that the proposed method is effective and outperforms the state-of-the-art in most settings. This manuscript provides a full version of a workshop paper [1].
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