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Register a new userDistGNN: Scalable Distributed Training for Large-Scale Graph Neural Networks
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Added by
Md Vasimuddin
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Full-batch training on Graph Neural Networks (GNN) to learn the structure of large graphs is a critical problem that needs to scale to hundreds of compute nodes to be feasible. It is challenging due to large memory capacity and bandwidth requirements on a single compute node and high communication volumes across multiple nodes. In this paper, we present DistGNN that optimizes the well-known Deep Graph Library (DGL) for full-batch training on CPU clusters via an efficient shared memory implementation, communication reduction using a minimum vertex-cut graph partitioning algorithm and communication avoidance using a family of delayed-update algorithms. Our results on four common GNN benchmark datasets: Reddit, OGB-Products, OGB-Papers and Proteins, show up to 3.7x speed-up using a single CPU socket and up to 97x speed-up using 128 CPU sockets, respectively, over baseline DGL implementations running on a single CPU socket
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The graph convolutional network (GCN) is a go-to solution for machine learning on graphs, but its training is notoriously difficult to scale both in terms of graph size and the number of model parameters. Although some work has explored training on large-scale graphs (e.g., GraphSAGE, ClusterGCN, etc.), we pioneer efficient training of large-scale GCN models (i.e., ultra-wide, overparameterized models) with the proposal of a novel, distributed training framework. Our proposed training methodology, called GIST, disjointly partitions the parameters of a GCN model into several, smaller sub-GCNs that are trained independently and in parallel. In addition to being compatible with any GCN architecture, GIST improves model performance, scales to training on arbitrarily large graphs, significantly decreases wall-clock training time, and enables the training of markedly overparameterized GCN models. Remarkably, with GIST, we train an astonishgly-wide 32,768-dimensional GraphSAGE model, which exceeds the capacity of a single GPU by a factor of 8X, to SOTA performance on the Amazon2M dataset.
Graph Neural Networks (GNNs) are a new and increasingly popular family of deep neural network architectures to perform learning on graphs. Training them efficiently is challenging due to the irregular nature of graph data. The problem becomes even more challenging when scaling to large graphs that exceed the capacity of single devices. Standard approaches to distributed DNN training, such as data and model parallelism, do not directly apply to GNNs. Instead, two different approaches have emerged in the literature: whole-graph and sample-based training. In this paper, we review and compare the two approaches. Scalability is challenging with both approaches, but we make a case that research should focus on sample-based training since it is a more promising approach. Finally, we review recent systems supporting sample-based training.
Modern machine learning techniques are successfully being adapted to data modeled as graphs. However, many real-world graphs are typically very large and do not fit in memory, often making the problem of training machine learning models on them intractable. Distributed training has been successfully employed to alleviate memory problems and speed up training in machine learning domains in which the input data is assumed to be independently identical distributed (i.i.d). However, distributing the training of non i.i.d data such as graphs that are used as training inputs in Graph Convolutional Networks (GCNs) causes accuracy problems since information is lost at the graph partitioning boundaries. In this paper, we propose a training strategy that mitigates the lost information across multiple partitions of a graph through a subgraph approximation scheme. Our proposed approach augments each sub-graph with a small amount of edge and vertex information that is approximated from all other sub-graphs. The subgraph approximation approach helps the distributed training system converge at single-machine accuracy, while keeping the memory footprint low and minimizing synchronization overhead between the machines.
Techniques such as ensembling and distillation promise model quality improvements when paired with almost any base model. However, due to increased test-time cost (for ensembles) and increased complexity of the training pipeline (for distillation), these techniques are challenging to use in industrial settings. In this paper we explore a variant of distillation which is relatively straightforward to use as it does not require a complicated multi-stage setup or many new hyperparameters. Our first claim is that online distillation enables us to use extra parallelism to fit very large datasets about twice as fast. Crucially, we can still speed up training even after we have already reached the point at which additional parallelism provides no benefit for synchronous or asynchronous stochastic gradient descent. Two neural networks trained on disjoint subsets of the data can share knowledge by encouraging each model to agree with the predictions the other model would have made. These predictions can come from a stale version of the other model so they can be safely computed using weights that only rarely get transmitted. Our second claim is that online distillation is a cost-effective way to make the exact predictions of a model dramatically more reproducible. We support our claims using experiments on the Criteo Display Ad Challenge dataset, ImageNet, and the largest to-date dataset used for neural language modeling, containing $6times 10^{11}$ tokens and based on the Common Crawl repository of web data.
Graph neural networks (GNNs) have been demonstrated as a powerful tool for analysing non-Euclidean graph data. However, the lack of efficient distributed graph learning systems severely hinders applications of GNNs, especially when graphs are big, of high density or with highly skewed node degree distributions. In this paper, we present a new distributed graph learning system GraphTheta, which supports multiple training strategies and enables efficient and scalable learning on big graphs. GraphTheta implements both localized and globalized graph convolutions on graphs, where a new graph learning abstraction NN-TGAR is designed to bridge the gap between graph processing and graph learning frameworks. A distributed graph engine is proposed to conduct the stochastic gradient descent optimization with hybrid-parallel execution. Moreover, we add support for a new cluster-batched training strategy in addition to the conventional global-batched and mini-batched ones. We evaluate GraphTheta using a number of network data with network size ranging from small-, modest- to large-scale. Experimental results show that GraphTheta scales almost linearly to 1,024 workers and trains an in-house developed GNN model within 26 hours on Alipay dataset of 1.4 billion nodes and 4.1 billion attributed edges. Moreover, GraphTheta also obtains better prediction results than the state-of-the-art GNN methods. To the best of our knowledge, this work represents the largest edge-attributed GNN learning task conducted on a billion-scale network in the literature.
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