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Register a new userGIST: Distributed Training for Large-Scale Graph Convolutional Networks
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Added by
Anastasios Kyrillidis
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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The graph convolutional network (GCN) is a go-to solution for machine learning on graphs, but its training is notoriously difficult to scale both in terms of graph size and the number of model parameters. Although some work has explored training on large-scale graphs (e.g., GraphSAGE, ClusterGCN, etc.), we pioneer efficient training of large-scale GCN models (i.e., ultra-wide, overparameterized models) with the proposal of a novel, distributed training framework. Our proposed training methodology, called GIST, disjointly partitions the parameters of a GCN model into several, smaller sub-GCNs that are trained independently and in parallel. In addition to being compatible with any GCN architecture, GIST improves model performance, scales to training on arbitrarily large graphs, significantly decreases wall-clock training time, and enables the training of markedly overparameterized GCN models. Remarkably, with GIST, we train an astonishgly-wide 32,768-dimensional GraphSAGE model, which exceeds the capacity of a single GPU by a factor of 8X, to SOTA performance on the Amazon2M dataset.
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Full-batch training on Graph Neural Networks (GNN) to learn the structure of large graphs is a critical problem that needs to scale to hundreds of compute nodes to be feasible. It is challenging due to large memory capacity and bandwidth requirements on a single compute node and high communication volumes across multiple nodes. In this paper, we present DistGNN that optimizes the well-known Deep Graph Library (DGL) for full-batch training on CPU clusters via an efficient shared memory implementation, communication reduction using a minimum vertex-cut graph partitioning algorithm and communication avoidance using a family of delayed-update algorithms. Our results on four common GNN benchmark datasets: Reddit, OGB-Products, OGB-Papers and Proteins, show up to 3.7x speed-up using a single CPU socket and up to 97x speed-up using 128 CPU sockets, respectively, over baseline DGL implementations running on a single CPU socket
Training Graph Convolutional Networks (GCNs) is expensive as it needs to aggregate data recursively from neighboring nodes. To reduce the computation overhead, previous works have proposed various neighbor sampling methods that estimate the aggregation result based on a small number of sampled neighbors. Although these methods have successfully accelerated the training, they mainly focus on the single-machine setting. As real-world graphs are large, training GCNs in distributed systems is desirable. However, we found that the existing neighbor sampling methods do not work well in a distributed setting. Specifically, a naive implementation may incur a huge amount of communication of feature vectors among different machines. To address this problem, we propose a communication-efficient neighbor sampling method in this work. Our main idea is to assign higher sampling probabilities to the local nodes so that remote nodes are accessed less frequently. We present an algorithm that determines the local sampling probabilities and makes sure our skewed neighbor sampling does not affect much the convergence of the training. Our experiments with node classification benchmarks show that our method significantly reduces the communication overhead for distributed GCN training with little accuracy loss.
Modern machine learning techniques are successfully being adapted to data modeled as graphs. However, many real-world graphs are typically very large and do not fit in memory, often making the problem of training machine learning models on them intractable. Distributed training has been successfully employed to alleviate memory problems and speed up training in machine learning domains in which the input data is assumed to be independently identical distributed (i.i.d). However, distributing the training of non i.i.d data such as graphs that are used as training inputs in Graph Convolutional Networks (GCNs) causes accuracy problems since information is lost at the graph partitioning boundaries. In this paper, we propose a training strategy that mitigates the lost information across multiple partitions of a graph through a subgraph approximation scheme. Our proposed approach augments each sub-graph with a small amount of edge and vertex information that is approximated from all other sub-graphs. The subgraph approximation approach helps the distributed training system converge at single-machine accuracy, while keeping the memory footprint low and minimizing synchronization overhead between the machines.
Graph embedding methods produce unsupervised node features from graphs that can then be used for a variety of machine learning tasks. Modern graphs, particularly in industrial applications, contain billions of nodes and trillions of edges, which exceeds the capability of existing embedding systems. We present PyTorch-BigGraph (PBG), an embedding system that incorporates several modifications to traditional multi-relation embedding systems that allow it to scale to graphs with billions of nodes and trillions of edges. PBG uses graph partitioning to train arbitrarily large embeddings on either a single machine or in a distributed environment. We demonstrate comparable performance with existing embedding systems on common benchmarks, while allowing for scaling to arbitrarily large graphs and parallelization on multiple machines. We train and evaluate embeddings on several large social network graphs as well as the full Freebase dataset, which contains over 100 million nodes and 2 billion edges.
Graph convolutional networks (GCNs) have been employed as a kind of significant tool on many graph-based applications recently. Inspired by convolutional neural networks (CNNs), GCNs generate the embeddings of nodes by aggregating the information of their neighbors layer by layer. However, the high computational and memory cost of GCNs due to the recursive neighborhood expansion across GCN layers makes it infeasible for training on large graphs. To tackle this issue, several sampling methods during the process of information aggregation have been proposed to train GCNs in a mini-batch Stochastic Gradient Descent (SGD) manner. Nevertheless, these sampling strategies sometimes bring concerns about insufficient information collection, which may hinder the learning performance in terms of accuracy and convergence. To tackle the dilemma between accuracy and efficiency, we propose to use aggregators with different granularities to gather neighborhood information in different layers. Then, a degree-based sampling strategy, which avoids the exponential complexity, is constructed for sampling a fixed number of nodes. Combining the above two mechanisms, the proposed model, named Mix-grained GCN (MG-GCN) achieves state-of-the-art performance in terms of accuracy, training speed, convergence speed, and memory cost through a comprehensive set of experiments on four commonly used benchmark datasets and a new Ethereum dataset.
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