Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userSelf-supervised Image-text Pre-training With Mixed Data In Chest X-rays
75
0
0.0
(
0
)
Added by
Xiaosong Wang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
Pre-trained models, e.g., from ImageNet, have proven to be effective in boosting the performance of many downstream applications. It is too demanding to acquire large-scale annotations to build such models for medical imaging. Meanwhile, there are numerous clinical data (in the form of images and text reports) stored in the hospital information systems. The paired image-text data from the same patient study could be utilized for the pre-training task in a weakly supervised manner. However, the integrity, accessibility, and amount of such raw data vary across different institutes, e.g., paired vs. unpaired (image-only or text-only). In this work, we introduce an image-text pre-training framework that can learn from these raw data with mixed data inputs, i.e., paired image-text data, a mixture of paired and unpaired data. The unpaired data can be sourced from one or multiple institutes (e.g., images from one institute coupled with texts from another). Specifically, we propose a transformer-based training framework for jointly learning the representation of both the image and text data. In addition to the existing masked language modeling, multi-scale masked vision modeling is introduced as a self-supervised training task for image patch regeneration. We not only demonstrate the feasibility of pre-training across mixed data inputs but also illustrate the benefits of adopting such pre-trained models in 3 chest X-ray applications, i.e., classification, retrieval, and image regeneration. Superior results are reported in comparison to prior art using MIMIC-CXR, NIH14-CXR, and OpenI-CXR datasets.
rate research
Read More
Self-supervised pre-training (SSP) employs random image transformations to generate training data for visual representation learning. In this paper, we first present a modeling framework that unifies existing SSP methods as learning to predict pseudo-labels. Then, we propose new data augmentation methods of generating training examples whose pseudo-labels are harder to predict than those generated via random image transformations. Specifically, we use adversarial training and CutMix to create hard examples (HEXA) to be used as augmented views for MoCo-v2 and DeepCluster-v2, leading to two variants HEXA_{MoCo} and HEXA_{DCluster}, respectively. In our experiments, we pre-train models on ImageNet and evaluate them on multiple public benchmarks. Our evaluation shows that the two new algorithm variants outperform their original counterparts, and achieve new state-of-the-art on a wide range of tasks where limited task supervision is available for fine-tuning. These results verify that hard examples are instrumental in improving the generalization of the pre-trained models.
The common self-supervised pre-training practice requires collecting massive unlabeled data together and then trains a representation model, dubbed textbf{joint training}. However, in real-world scenarios where data are collected in a streaming fashion, the joint training scheme is usually storage-heavy and time-consuming. A more efficient alternative is to train a model continually with streaming data, dubbed textbf{sequential training}. Nevertheless, it is unclear how well sequential self-supervised pre-training performs with streaming data. In this paper, we conduct thorough experiments to investigate self-supervised pre-training with streaming data. Specifically, we evaluate the transfer performance of sequential self-supervised pre-training with four different data sequences on three different downstream tasks and make comparisons with joint self-supervised pre-training. Surprisingly, we find sequential self-supervised learning exhibits almost the same performance as the joint training when the distribution shifts within streaming data are mild. Even for data sequences with large distribution shifts, sequential self-supervised training with simple techniques, e.g., parameter regularization or data replay, still performs comparably to joint training. Based on our findings, we recommend using sequential self-supervised training as a textbf{more efficient yet performance-competitive} representation learning practice for real-world applications.
The training of deep learning models generally requires a large amount of annotated data for effective convergence and generalisation. However, obtaining high-quality annotations is a laboursome and expensive process due to the need of expert radiologists for the labelling task. The study of semi-supervised learning in medical image analysis is then of crucial importance given that it is much less expensive to obtain unlabelled images than to acquire images labelled by expert radiologists.Essentially, semi-supervised methods leverage large sets of unlabelled data to enable better training convergence and generalisation than if we use only the small set of labelled images.In this paper, we propose the Self-supervised Mean Teacher for Semi-supervised (S$^2$MTS$^2$) learning that combines self-supervised mean-teacher pre-training with semi-supervised fine-tuning. The main innovation of S$^2$MTS$^2$ is the self-supervised mean-teacher pre-training based on the joint contrastive learning, which uses an infinite number of pairs of positive query and key features to improve the mean-teacher representation. The model is then fine-tuned using the exponential moving average teacher framework trained with semi-supervised learning.We validate S$^2$MTS$^2$ on the thorax disease multi-label classification problem from the dataset Chest X-ray14, where we show that it outperforms the previous SOTA semi-supervised learning methods by a large margin.
The success of learning with noisy labels (LNL) methods relies heavily on the success of a warm-up stage where standard supervised training is performed using the full (noisy) training set. In this paper, we identify a warm-up obstacle: the inability of standard warm-up stages to train high quality feature extractors and avert memorization of noisy labels. We propose Contrast to Divide (C2D), a simple framework that solves this problem by pre-training the feature extractor in a self-supervised fashion. Using self-supervised pre-training boosts the performance of existing LNL approaches by drastically reducing the warm-up stages susceptibility to noise level, shortening its duration, and increasing extracted feature quality. C2D works out of the box with existing methods and demonstrates markedly improved performance, especially in the high noise regime, where we get a boost of more than 27% for CIFAR-100 with 90% noise over the previous state of the art. In real-life noise settings, C2D trained on mini-WebVision outperforms previous works both in WebVision and ImageNet validation sets by 3% top-1 accuracy. We perform an in-depth analysis of the framework, including investigating the performance of different pre-training approaches and estimating the effective upper bound of the LNL performance with semi-supervised learning. Code for reproducing our experiments is available at https://github.com/ContrastToDivide/C2D
While annotated images for change detection using satellite imagery are scarce and costly to obtain, there is a wealth of unlabeled images being generated every day. In order to leverage these data to learn an image representation more adequate for change detection, we explore methods that exploit the temporal consistency of Sentinel-2 times series to obtain a usable self-supervised learning signal. For this, we build and make publicly available (https://zenodo.org/record/4280482) the Sentinel-2 Multitemporal Cities Pairs (S2MTCP) dataset, containing multitemporal image pairs from 1520 urban areas worldwide. We test the results of multiple self-supervised learning methods for pre-training models for change detection and apply it on a public change detection dataset made of Sentinel-2 image pairs (OSCD).
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
