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Register a new userLearning Vector Quantized Shape Code for Amodal Blastomere Instance Segmentation
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Added by
Won-Dong Jang
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Blastomere instance segmentation is important for analyzing embryos abnormality. To measure the accurate shapes and sizes of blastomeres, their amodal segmentation is necessary. Amodal instance segmentation aims to recover the complete silhouette of an object even when the object is not fully visible. For each detected object, previous methods directly regress the target mask from input features. However, images of an object under different amounts of occlusion should have the same amodal mask output, which makes it harder to train the regression model. To alleviate the problem, we propose to classify input features into intermediate shape codes and recover complete object shapes from them. First, we pre-train the Vector Quantized Variational Autoencoder (VQ-VAE) model to learn these discrete shape codes from ground truth amodal masks. Then, we incorporate the VQ-VAE model into the amodal instance segmentation pipeline with an additional refinement module. We also detect an occlusion map to integrate occlusion information with a backbone feature. As such, our network faithfully detects bounding boxes of amodal objects. On an internal embryo cell image benchmark, the proposed method outperforms previous state-of-the-art methods. To show generalizability, we show segmentation results on the public KINS natural image benchmark. To examine the learned shape codes and model design choices, we perform ablation studies on a synthetic dataset of simple overlaid shapes. Our method would enable accurate measurement of blastomeres in in vitro fertilization (IVF) clinics, which potentially can increase IVF success rate.
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In this work, we demonstrate yet another approach to tackle the amodal segmentation problem. Specifically, we first introduce a new representation, namely a semantics-aware distance map (sem-dist map), to serve as our target for amodal segmentation instead of the commonly used masks and heatmaps. The sem-dist map is a kind of level-set representation, of which the different regions of an object are placed into different levels on the map according to their visibility. It is a natural extension of masks and heatmaps, where modal, amodal segmentation, as well as depth order information, are all well-described. Then we also introduce a novel convolutional neural network (CNN) architecture, which we refer to as semantic layering network, to estimate sem-dist maps layer by layer, from the global-level to the instance-level, for all objects in an image. Extensive experiments on the COCOA and D2SA datasets have demonstrated that our framework can predict amodal segmentation, occlusion and depth order with state-of-the-art performance.
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Panoptic segmentation requires segments of both things (countable object instances) and stuff (uncountable and amorphous regions) within a single output. A common approach involves the fusion of instance segmentation (for things) and semantic segmentation (for stuff) into a non-overlapping placement of segments, and resolves overlaps. However, instance ordering with detection confidence do not correlate well with natural occlusion relationship. To resolve this issue, we propose a branch that is tasked with modeling how two instance masks should overlap one another as a binary relation. Our method, named OCFusion, is lightweight but particularly effective in the instance fusion process. OCFusion is trained with the ground truth relation derived automatically from the existing dataset annotations. We obtain state-of-the-art results on COCO and show competitive results on the Cityscapes panoptic segmentation benchmark.
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