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Register a new userTransducer Adaptive Ultrasound Volume Reconstruction
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Added by
Hengtao Guo
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Reconstructed 3D ultrasound volume provides more context information compared to a sequence of 2D scanning frames, which is desirable for various clinical applications such as ultrasound-guided prostate biopsy. Nevertheless, 3D volume reconstruction from freehand 2D scans is a very challenging problem, especially without the use of external tracking devices. Recent deep learning based methods demonstrate the potential of directly estimating inter-frame motion between consecutive ultrasound frames. However, such algorithms are specific to particular transducers and scanning trajectories associated with the training data, which may not be generalized to other image acquisition settings. In this paper, we tackle the data acquisition difference as a domain shift problem and propose a novel domain adaptation strategy to adapt deep learning algorithms to data acquired with different transducers. Specifically, feature extractors that generate transducer-invariant features from different datasets are trained by minimizing the discrepancy between deep features of paired samples in a latent space. Our results show that the proposed domain adaptation method can successfully align different feature distributions while preserving the transducer-specific information for universal freehand ultrasound volume reconstruction.
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Prostate cancer biopsy benefits from accurate fusion of transrectal ultrasound (TRUS) and magnetic resonance (MR) images. In the past few years, convolutional neural networks (CNNs) have been proved powerful in extracting image features crucial for image registration. However, challenging applications and recent advances in computer vision suggest that CNNs are quite limited in its ability to understand spatial correspondence between features, a task in which the self-attention mechanism excels. This paper aims to develop a self-attention mechanism specifically for cross-modal image registration. Our proposed cross-modal attention block effectively maps each of the features in one volume to all features in the corresponding volume. Our experimental results demonstrate that a CNN network designed with the cross-modal attention block embedded outperforms an advanced CNN network 10 times of its size. We also incorporated visualization techniques to improve the interpretability of our network. The source code of our work is available at https://github.com/DIAL-RPI/Attention-Reg .
Lip reading, aiming to recognize spoken sentences according to the given video of lip movements without relying on the audio stream, has attracted great interest due to its application in many scenarios. Although prior works that explore lip reading have obtained salient achievements, they are all trained in a non-simultaneous manner where the predictions are generated requiring access to the full video. To breakthrough this constraint, we study the task of simultaneous lip reading and devise SimulLR, a simultaneous lip Reading transducer with attention-guided adaptive memory from three aspects: (1) To address the challenge of monotonic alignments while considering the syntactic structure of the generated sentences under simultaneous setting, we build a transducer-based model and design several effective training strategies including CTC pre-training, model warm-up and curriculum learning to promote the training of the lip reading transducer. (2) To learn better spatio-temporal representations for simultaneous encoder, we construct a truncated 3D convolution and time-restricted self-attention layer to perform the frame-to-frame interaction within a video segment containing fixed number of frames. (3) The history information is always limited due to the storage in real-time scenarios, especially for massive video data. Therefore, we devise a novel attention-guided adaptive memory to organize semantic information of history segments and enhance the visual representations with acceptable computation-aware latency. The experiments show that the SimulLR achieves the translation speedup 9.10$times$ compared with the state-of-the-art non-simultaneous methods, and also obtains competitive results, which indicates the effectiveness of our proposed methods.
Transrectal ultrasound (US) is the most commonly used imaging modality to guide prostate biopsy and its 3D volume provides even richer context information. Current methods for 3D volume reconstruction from freehand US scans require external tracking devices to provide spatial position for every frame. In this paper, we propose a deep contextual learning network (DCL-Net), which can efficiently exploit the image feature relationship between US frames and reconstruct 3D US volumes without any tracking device. The proposed DCL-Net utilizes 3D convolutions over a US video segment for feature extraction. An embedded self-attention module makes the network focus on the speckle-rich areas for better spatial movement prediction. We also propose a novel case-wise correlation loss to stabilize the training process for improved accuracy. Highly promising results have been obtained by using the developed method. The experiments with ablation studies demonstrate superior performance of the proposed method by comparing against other state-of-the-art methods. Source code of this work is publicly available at https://github.com/DIAL-RPI/FreehandUSRecon.
3D ultrasound (US) is widely used for its rich diagnostic information. However, it is criticized for its limited field of view. 3D freehand US reconstruction is promising in addressing the problem by providing broad range and freeform scan. The existing deep learning based methods only focus on the basic cases of skill sequences, and the model relies on the training data heavily. The sequences in real clinical practice are a mix of diverse skills and have complex scanning paths. Besides, deep models should adapt themselves to the testing cases with prior knowledge for better robustness, rather than only fit to the training cases. In this paper, we propose a novel approach to sensorless freehand 3D US reconstruction considering the complex skill sequences. Our contribution is three-fold. First, we advance a novel online learning framework by designing a differentiable reconstruction algorithm. It realizes an end-to-end optimization from section sequences to the reconstructed volume. Second, a self-supervised learning method is developed to explore the context information that reconstructed by the testing data itself, promoting the perception of the model. Third, inspired by the effectiveness of shape prior, we also introduce adversarial training to strengthen the learning of anatomical shape prior in the reconstructed volume. By mining the context and structural cues of the testing data, our online learning methods can drive the model to handle complex skill sequences. Experimental results on developmental dysplasia of the hip US and fetal US datasets show that, our proposed method can outperform the start-of-the-art methods regarding the shift errors and path similarities.
Morphological reconstruction (MR) is often employed by seeded image segmentation algorithms such as watershed transform and power watershed as it is able to filter seeds (regional minima) to reduce over-segmentation. However, MR might mistakenly filter meaningful seeds that are required for generating accurate segmentation and it is also sensitive to the scale because a single-scale structuring element is employed. In this paper, a novel adaptive morphological reconstruction (AMR) operation is proposed that has three advantages. Firstly, AMR can adaptively filter useless seeds while preserving meaningful ones. Secondly, AMR is insensitive to the scale of structuring elements because multiscale structuring elements are employed. Finally, AMR has two attractive properties: monotonic increasingness and convergence that help seeded segmentation algorithms to achieve a hierarchical segmentation. Experiments clearly demonstrate that AMR is useful for improving algorithms of seeded image segmentation and seed-based spectral segmentation. Compared to several state-of-the-art algorithms, the proposed algorithms provide better segmentation results requiring less computing time. Source code is available at https://github.com/SUST-reynole/AMR.
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