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Register a new userAdaptive Morphological Reconstruction for Seeded Image Segmentation
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Added by
Tao Lei
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Morphological reconstruction (MR) is often employed by seeded image segmentation algorithms such as watershed transform and power watershed as it is able to filter seeds (regional minima) to reduce over-segmentation. However, MR might mistakenly filter meaningful seeds that are required for generating accurate segmentation and it is also sensitive to the scale because a single-scale structuring element is employed. In this paper, a novel adaptive morphological reconstruction (AMR) operation is proposed that has three advantages. Firstly, AMR can adaptively filter useless seeds while preserving meaningful ones. Secondly, AMR is insensitive to the scale of structuring elements because multiscale structuring elements are employed. Finally, AMR has two attractive properties: monotonic increasingness and convergence that help seeded segmentation algorithms to achieve a hierarchical segmentation. Experiments clearly demonstrate that AMR is useful for improving algorithms of seeded image segmentation and seed-based spectral segmentation. Compared to several state-of-the-art algorithms, the proposed algorithms provide better segmentation results requiring less computing time. Source code is available at https://github.com/SUST-reynole/AMR.
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Although spatial information of images usually enhance the robustness of the Fuzzy C-Means (FCM) algorithm, it greatly increases the computational costs for image segmentation. To achieve a sound trade-off between the segmentation performance and the speed of clustering, we come up with a Kullback-Leibler (KL) divergence-based FCM algorithm by incorporating a tight wavelet frame transform and a morphological reconstruction operation. To enhance FCMs robustness, an observed image is first filtered by using the morphological reconstruction. A tight wavelet frame system is employed to decompose the observed and filtered images so as to form their feature sets. Considering these feature sets as data of clustering, an modified FCM algorithm is proposed, which introduces a KL divergence term in the partition matrix into its objective function. The KL divergence term aims to make membership degrees of each image pixel closer to those of its neighbors, which brings that the membership partition becomes more suitable and the parameter setting of FCM becomes simplified. On the basis of the obtained partition matrix and prototypes, the segmented feature set is reconstructed by minimizing the inverse process of the modified objective function. To modify abnormal features produced in the reconstruction process, each reconstructed feature is reassigned to the closest prototype. As a result, the segmentation accuracy of KL divergence-based FCM is further improved. Whats more, the segmented image is reconstructed by using a tight wavelet frame reconstruction operation. Finally, supporting experiments coping with synthetic, medical and color images are reported. Experimental results exhibit that the proposed algorithm works well and comes with better segmentation performance than other comparative algorithms. Moreover, the proposed algorithm requires less time than most of the FCM-related algorithms.
Supervised semantic segmentation normally assumes the test data being in a similar data domain as the training data. However, in practice, the domain mismatch between the training and unseen data could lead to a significant performance drop. Obtaining accurate pixel-wise label for images in different domains is tedious and labor intensive, especially for histopathology images. In this paper, we propose a dual adaptive pyramid network (DAPNet) for histopathological gland segmentation adapting from one stain domain to another. We tackle the domain adaptation problem on two levels: 1) the image-level considers the differences of image color and style; 2) the feature-level addresses the spatial inconsistency between two domains. The two components are implemented as domain classifiers with adversarial training. We evaluate our new approach using two gland segmentation datasets with H&E and DAB-H stains respectively. The extensive experiments and ablation study demonstrate the effectiveness of our approach on the domain adaptive segmentation task. We show that the proposed approach performs favorably against other state-of-the-art methods.
Deep learning has achieved remarkable success in medicalimage segmentation, but it usually requires a large numberof images labeled with fine-grained segmentation masks, andthe annotation of these masks can be very expensive andtime-consuming. Therefore, recent methods try to use un-supervised domain adaptation (UDA) methods to borrow in-formation from labeled data from other datasets (source do-mains) to a new dataset (target domain). However, due tothe absence of labels in the target domain, the performance ofUDA methods is much worse than that of the fully supervisedmethod. In this paper, we propose a weakly supervised do-main adaptation setting, in which we can partially label newdatasets with bounding boxes, which are easier and cheaperto obtain than segmentation masks. Accordingly, we proposea new weakly-supervised domain adaptation method calledBox-Adapt, which fully explores the fine-grained segmenta-tion mask in the source domain and the weak bounding boxin the target domain. Our Box-Adapt is a two-stage methodthat first performs joint training on the source and target do-mains, and then conducts self-training with the pseudo-labelsof the target domain. We demonstrate the effectiveness of ourmethod in the liver segmentation task. Weakly supervised do-main adaptation
In the recent years, there has been a significant improvement in the quality of samples produced by (deep) generative models such as variational auto-encoders and generative adversarial networks. However, the representation capabilities of these methods still do not capture the full distribution for complex classes of images, such as human faces. This deficiency has been clearly observed in previous works that use pre-trained generative models to solve imaging inverse problems. In this paper, we suggest to mitigate the limited representation capabilities of generators by making them image-adaptive and enforcing compliance of the restoration with the observations via back-projections. We empirically demonstrate the advantages of our proposed approach for image super-resolution and compressed sensing.
Context information plays an indispensable role in the success of semantic segmentation. Recently, non-local self-attention based methods are proved to be effective for context information collection. Since the desired context consists of spatial-wise and channel-wise attentions, 3D representation is an appropriate formulation. However, these non-local methods describe 3D context information based on a 2D similarity matrix, where space compression may lead to channel-wise attention missing. An alternative is to model the contextual information directly without compression. However, this effort confronts a fundamental difficulty, namely the high-rank property of context information. In this paper, we propose a new approach to model the 3D context representations, which not only avoids the space compression but also tackles the high-rank difficulty. Here, inspired by tensor canonical-polyadic decomposition theory (i.e, a high-rank tensor can be expressed as a combination of rank-1 tensors.), we design a low-rank-to-high-rank context reconstruction framework (i.e, RecoNet). Specifically, we first introduce the tensor generation module (TGM), which generates a number of rank-1 tensors to capture fragments of context feature. Then we use these rank-1 tensors to recover the high-rank context features through our proposed tensor reconstruction module (TRM). Extensive experiments show that our method achieves state-of-the-art on various public datasets. Additionally, our proposed method has more than 100 times less computational cost compared with conventional non-local-based methods.
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