No Arabic abstract
Accurate and efficient catheter segmentation in 3D ultrasound (US) is essential for cardiac intervention. Currently, the state-of-the-art segmentation algorithms are based on convolutional neural networks (CNNs), which achieved remarkable performances in a standard Cartesian volumetric data. Nevertheless, these approaches suffer the challenges of low efficiency and GPU unfriendly image size. Therefore, such difficulties and expensive hardware requirements become a bottleneck to build accurate and efficient segmentation models for real clinical application. In this paper, we propose a novel Frustum ultrasound based catheter segmentation method. Specifically, Frustum ultrasound is a polar coordinate based image, which includes same information of standard Cartesian image but has much smaller size, which overcomes the bottleneck of efficiency than conventional Cartesian images. Nevertheless, the irregular and deformed Frustum images lead to more efforts for accurate voxel-level annotation. To address this limitation, a weakly supervised learning framework is proposed, which only needs 3D bounding box annotations overlaying the region-of-interest to training the CNNs. Although the bounding box annotation includes noise and inaccurate annotation to mislead to model, it is addressed by the proposed pseudo label generated scheme. The labels of training voxels are generated by incorporating class activation maps with line filtering, which is iteratively updated during the training. Our experimental results show the proposed method achieved the state-of-the-art performance with an efficiency of 0.25 second per volume. More crucially, the Frustum image segmentation provides a much faster and cheaper solution for segmentation in 3D US image, which meet the demands of clinical applications.
In this paper, we investigate the problem of weakly supervised 3D vehicle detection. Conventional methods for 3D object detection need vast amounts of manually labelled 3D data as supervision signals. However, annotating large datasets requires huge human efforts, especially for 3D area. To tackle this problem, we propose frustum-aware geometric reasoning (FGR) to detect vehicles in point clouds without any 3D annotations. Our method consists of two stages: coarse 3D segmentation and 3D bounding box estimation. For the first stage, a context-aware adaptive region growing algorithm is designed to segment objects based on 2D bounding boxes. Leveraging predicted segmentation masks, we develop an anti-noise approach to estimate 3D bounding boxes in the second stage. Finally 3D pseudo labels generated by our method are utilized to train a 3D detector. Independent of any 3D groundtruth, FGR reaches comparable performance with fully supervised methods on the KITTI dataset. The findings indicate that it is able to accurately detect objects in 3D space with only 2D bounding boxes and sparse point clouds.
Fast and accurate catheter detection in cardiac catheterization using harmless 3D ultrasound (US) can improve the efficiency and outcome of the intervention. However, the low image quality of US requires extra training for sonographers to localize the catheter. In this paper, we propose a catheter detection method based on a pre-trained VGG network, which exploits 3D information through re-organized cross-sections to segment the catheter by a shared fully convolutional network (FCN), which is called a Direction-Fused FCN (DF-FCN). Based on the segmented image of DF-FCN, the catheter can be localized by model fitting. Our experiments show that the proposed method can successfully detect an ablation catheter in a challenging ex-vivo 3D US dataset, which was collected on the porcine heart. Extensive analysis shows that the proposed method achieves a Dice score of 57.7%, which offers at least an 11.8 % improvement when compared to state-of-the-art instrument detection methods. Due to the improved segmentation performance by the DF-FCN, the catheter can be localized with an error of only 1.4 mm.
Pixel-wise clean annotation is necessary for fully-supervised semantic segmentation, which is laborious and expensive to obtain. In this paper, we propose a weakly supervised 2D semantic segmentation model by incorporating sparse bounding box labels with available 3D information, which is much easier to obtain with advanced sensors. We manually labeled a subset of the 2D-3D Semantics(2D-3D-S) dataset with bounding boxes, and introduce our 2D-3D inference module to generate accurate pixel-wise segment proposal masks. Guided by 3D information, we first generate a point cloud of objects and calculate objectness probability score for each point. Then we project the point cloud with objectness probabilities back to 2D images followed by a refinement step to obtain segment proposals, which are treated as pseudo labels to train a semantic segmentation network. Our method works in a recursive manner to gradually refine the above-mentioned segment proposals. Extensive experimental results on the 2D-3D-S dataset show that the proposed method can generate accurate segment proposals when bounding box labels are available on only a small subset of training images. Performance comparison with recent state-of-the-art methods further illustrates the effectiveness of our method.
This paper addresses the task of detecting and localising fetal anatomical regions in 2D ultrasound images, where only image-level labels are present at training, i.e. without any localisation or segmentation information. We examine the use of convolutional neural network architectures coupled with soft proposal layers. The resulting network simultaneously performs anatomical region detection (classification) and localisation tasks. We generate a proposal map describing the attention of the network for a particular class. The network is trained on 85,500 2D fetal Ultrasound images and their associated labels. Labels correspond to six anatomical regions: head, spine, thorax, abdomen, limbs, and placenta. Detection achieves an average accuracy of 90% on individual regions, and show that the proposal maps correlate well with relevant anatomical structures. This work presents itself as a powerful and essential step towards subsequent tasks such as fetal position and pose estimation, organ-specific segmentation, or image-guided navigation. Code and additional material is available at https://ntoussaint.github.io/fetalnav
Annotation burden has become one of the biggest barriers to semantic segmentation. Approaches based on click-level annotations have therefore attracted increasing attention due to their superior trade-off between supervision and annotation cost. In this paper, we propose seminar learning, a new learning paradigm for semantic segmentation with click-level supervision. The fundamental rationale of seminar learning is to leverage the knowledge from different networks to compensate for insufficient information provided in click-level annotations. Mimicking a seminar, our seminar learning involves a teacher-student and a student-student module, where a student can learn from both skillful teachers and other students. The teacher-student module uses a teacher network based on the exponential moving average to guide the training of the student network. In the student-student module, heterogeneous pseudo-labels are proposed to bridge the transfer of knowledge among students to enhance each others performance. Experimental results demonstrate the effectiveness of seminar learning, which achieves the new state-of-the-art performance of 72.51% (mIOU), surpassing previous methods by a large margin of up to 16.88% on the Pascal VOC 2012 dataset.