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Register a new userEncoder-decoder semantic segmentation models for electroluminescence images of thin-film photovoltaic modules
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We consider a series of image segmentation methods based on the deep neural networks in order to perform semantic segmentation of electroluminescence (EL) images of thin-film modules. We utilize the encoder-decoder deep neural network architecture. The framework is general such that it can easily be extended to other types of images (e.g. thermography) or solar cell technologies (e.g. crystalline silicon modules). The networks are trained and tested on a sample of images from a database with 6000 EL images of Copper Indium Gallium Diselenide (CIGS) thin film modules. We selected two types of features to extract, shunts and so called droplets. The latter feature is often observed in the set of images. Several models are tested using various combinations of encoder-decoder layers, and a procedure is proposed to select the best model. We show exemplary results with the best selected model. Furthermore, we applied the best model to the full set of 6000 images and demonstrate that the automated segmentation of EL images can reveal many subtle features which cannot be inferred from studying a small sample of images. We believe these features can contribute to process optimization and quality control.
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3D neuron segmentation is a key step for the neuron digital reconstruction, which is essential for exploring brain circuits and understanding brain functions. However, the fine line-shaped nerve fibers of neuron could spread in a large region, which brings great computational cost to the segmentation in 3D neuronal images. Meanwhile, the strong noises and disconnected nerve fibers in the image bring great challenges to the task. In this paper, we propose a 3D wavelet and deep learning based 3D neuron segmentation method. The neuronal image is first partitioned into neuronal cubes to simplify the segmentation task. Then, we design 3D WaveUNet, the first 3D wavelet integrated encoder-decoder network, to segment the nerve fibers in the cubes; the wavelets could assist the deep networks in suppressing data noise and connecting the broken fibers. We also produce a Neuronal Cube Dataset (NeuCuDa) using the biggest available annotated neuronal image dataset, BigNeuron, to train 3D WaveUNet. Finally, the nerve fibers segmented in cubes are assembled to generate the complete neuron, which is digitally reconstructed using an available automatic tracing algorithm. The experimental results show that our neuron segmentation method could completely extract the target neuron in noisy neuronal images. The integrated 3D wavelets can efficiently improve the performance of 3D neuron segmentation and reconstruction. The code and pre-trained models for this work will be available at https://github.com/LiQiufu/3D-WaveUNet.
In-vivo optical microscopy is advancing into routine clinical practice for non-invasively guiding diagnosis and treatment of cancer and other diseases, and thus beginning to reduce the need for traditional biopsy. However, reading and analysis of the optical microscopic images are generally still qualitative, relying mainly on visual examination. Here we present an automated semantic segmentation method called Multiscale Encoder-Decoder Network (MED-Net) that provides pixel-wise labeling into classes of patterns in a quantitative manner. The novelty in our approach is the modeling of textural patterns at multiple scales. This mimics the procedure for examining pathology images, which routinely starts with low magnification (low resolution, large field of view) followed by closer inspection of suspicious areas with higher magnification (higher resolution, smaller fields of view). We trained and tested our model on non-overlapping partitions of 117 reflectance confocal microscopy (RCM) mosaics of melanocytic lesions, an extensive dataset for this application, collected at four clinics in the US, and two in Italy. With patient-wise cross-validation, we achieved pixel-wise mean sensitivity and specificity of $70pm11%$ and $95pm2%$, respectively, with $0.71pm0.09$ Dice coefficient over six classes. In the scenario, we partitioned the data clinic-wise and tested the generalizability of the model over multiple clinics. In this setting, we achieved pixel-wise mean sensitivity and specificity of $74%$ and $95%$, respectively, with $0.75$ Dice coefficient. We compared MED-Net against the state-of-the-art semantic segmentation models and achieved better quantitative segmentation performance. Our results also suggest that, due to its nested multiscale architecture, the MED-Net model annotated RCM mosaics more coherently, avoiding unrealistic-fragmented annotations.
Semantic segmentation of remotely sensed images plays an important role in land resource management, yield estimation, and economic assessment. U-Net, a deep encoder-decoder architecture, has been used frequently for image segmentation with high accuracy. In this Letter, we incorporate multi-scale features generated by different layers of U-Net and design a multi-scale skip connected and asymmetric-convolution-based U-Net (MACU-Net), for segmentation using fine-resolution remotely sensed images. Our design has the following advantages: (1) The multi-scale skip connections combine and realign semantic features contained in both low-level and high-level feature maps; (2) the asymmetric convolution block strengthens the feature representation and feature extraction capability of a standard convolution layer. Experiments conducted on two remotely sensed datasets captured by different satellite sensors demonstrate that the proposed MACU-Net transcends the U-Net, U-NetPPL, U-Net 3+, amongst other benchmark approaches. Code is available at https://github.com/lironui/MACU-Net.
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Semantic segmentation of remote sensing images plays an important role in a wide range of applications including land resource management, biosphere monitoring and urban planning. Although the accuracy of semantic segmentation in remote sensing images has been increased significantly by deep convolutional neural networks, several limitations exist in standard models. First, for encoder-decoder architectures such as U-Net, the utilization of multi-scale features causes the underuse of information, where low-level features and high-level features are concatenated directly without any refinement. Second, long-range dependencies of feature maps are insufficiently explored, resulting in sub-optimal feature representations associated with each semantic class. Third, even though the dot-product attention mechanism has been introduced and utilized in semantic segmentation to model long-range dependencies, the large time and space demands of attention impede the actual usage of attention in application scenarios with large-scale input. This paper proposed a Multi-Attention-Network (MANet) to address these issues by extracting contextual dependencies through multiple efficient attention modules. A novel attention mechanism of kernel attention with linear complexity is proposed to alleviate the large computational demand in attention. Based on kernel attention and channel attention, we integrate local feature maps extracted by ResNeXt-101 with their corresponding global dependencies and reweight interdependent channel maps adaptively. Numerical experiments on three large-scale fine resolution remote sensing images captured by different satellite sensors demonstrate the superior performance of the proposed MANet, outperforming the DeepLab V3+, PSPNet, FastFCN, DANet, OCRNet, and other benchmark approaches.
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