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Register a new userAutomatic identification of fossils and abiotic grains during carbonate microfacies analysis using deep convolutional neural networks
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Petrographic analysis based on microfacies identification in thin sections is widely used in sedimentary environment interpretation and paleoecological reconstruction. Fossil recognition from microfacies is an essential procedure for petrographers to complete this task. Distinguishing the morphological and microstructural diversity of skeletal fragments requires extensive prior knowledge of fossil morphotypes in microfacies and long training sessions under the microscope. This requirement engenders certain challenges for sedimentologists and paleontologists, especially novices. However, a machine classifier can help address this challenge. In this study, we collected a microfacies image dataset comprising both public data from 1,149 references and our own materials (including 30,815 images of 22 fossil and abiotic grain groups). We employed a high-performance workstation to implement four classic deep convolutional neural networks (DCNNs), which have proven to be highly efficient in computer vision over the last several years. Our framework uses a transfer learning technique, which reuses the pre-trained parameters that are trained on a larger ImageNet dataset as initialization for the network to achieve high accuracy with low computing costs. We obtained up to 95% of the top one and 99% of the top three test accuracies in the Inception ResNet v2 architecture. The machine classifier exhibited 0.99 precision on minerals, such as dolomite and pyrite. Although it had some difficulty on samples having similar morphologies, such as the bivalve, brachiopod, and ostracod, it nevertheless obtained 0.88 precision. Our machine learning framework demonstrated high accuracy with reproducibility and bias avoidance that was comparable to those of human classifiers. Its application can thus eliminate much of the tedious, manually intensive efforts by human experts conducting routine identification.
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Prostate cancer is one of the most common forms of cancer and the third leading cause of cancer death in North America. As an integrated part of computer-aided detection (CAD) tools, diffusion-weighted magnetic resonance imaging (DWI) has been intensively studied for accurate detection of prostate cancer. With deep convolutional neural networks (CNNs) significant success in computer vision tasks such as object detection and segmentation, different CNNs architectures are increasingly investigated in medical imaging research community as promising solutions for designing more accurate CAD tools for cancer detection. In this work, we developed and implemented an automated CNNs-based pipeline for detection of clinically significant prostate cancer (PCa) for a given axial DWI image and for each patient. DWI images of 427 patients were used as the dataset, which contained 175 patients with PCa and 252 healthy patients. To measure the performance of the proposed pipeline, a test set of 108 (out of 427) patients were set aside and not used in the training phase. The proposed pipeline achieved area under the receiver operating characteristic curve (AUC) of 0.87 (95% Confidence Interval (CI): 0.84-0.90) and 0.84 (95% CI: 0.76-0.91) at slice level and patient level, respectively.
We present a content-based automatic music tagging algorithm using fully convolutional neural networks (FCNs). We evaluate different architectures consisting of 2D convolutional layers and subsampling layers only. In the experiments, we measure the AUC-ROC scores of the architectures with different complexities and input types using the MagnaTagATune dataset, where a 4-layer architecture shows state-of-the-art performance with mel-spectrogram input. Furthermore, we evaluated the performances of the architectures with varying the number of layers on a larger dataset (Million Song Dataset), and found that deeper models outperformed the 4-layer architecture. The experiments show that mel-spectrogram is an effective time-frequency representation for automatic tagging and that more complex models benefit from more training data.
Photo retouching enables photographers to invoke dramatic visual impressions by artistically enhancing their photos through stylistic color and tone adjustments. However, it is also a time-consuming and challenging task that requires advanced skills beyond the abilities of casual photographers. Using an automated algorithm is an appealing alternative to manual work but such an algorithm faces many hurdles. Many photographic styles rely on subtle adjustments that depend on the image content and even its semantics. Further, these adjustments are often spatially varying. Because of these characteristics, existing automatic algorithms are still limited and cover only a subset of these challenges. Recently, deep machine learning has shown unique abilities to address hard problems that resisted machine algorithms for long. This motivated us to explore the use of deep learning in the context of photo editing. In this paper, we explain how to formulate the automatic photo adjustment problem in a way suitable for this approach. We also introduce an image descriptor that accounts for the local semantics of an image. Our experiments demonstrate that our deep learning formulation applied using these descriptors successfully capture sophisticated photographic styles. In particular and unlike previous techniques, it can model local adjustments that depend on the image semantics. We show on several examples that this yields results that are qualitatively and quantitatively better than previous work.
Fetal cortical plate segmentation is essential in quantitative analysis of fetal brain maturation and cortical folding. Manual segmentation of the cortical plate, or manual refinement of automatic segmentations is tedious and time-consuming. Automatic segmentation of the cortical plate, on the other hand, is challenged by the relatively low resolution of the reconstructed fetal brain MRI scans compared to the thin structure of the cortical plate, partial voluming, and the wide range of variations in the morphology of the cortical plate as the brain matures during gestation. To reduce the burden of manual refinement of segmentations, we have developed a new and powerful deep learning segmentation method. Our method exploits new deep attentive modules with mixed kernel convolutions within a fully convolutional neural network architecture that utilizes deep supervision and residual connections. We evaluated our method quantitatively based on several performance measures and expert evaluations. Results show that our method outperforms several state-of-the-art deep models for segmentation, as well as a state-of-the-art multi-atlas segmentation technique. We achieved average Dice similarity coefficient of 0.87, average Hausdorff distance of 0.96 mm, and average symmetric surface difference of 0.28 mm on reconstructed fetal brain MRI scans of fetuses scanned in the gestational age range of 16 to 39 weeks. With a computation time of less than 1 minute per fetal brain, our method can facilitate and accelerate large-scale studies on normal and altered fetal brain cortical maturation and folding.
Image retargeting is the task of making images capable of being displayed on screens with different sizes. This work should be done so that high-level visual information and low-level features such as texture remain as intact as possible to the human visual system, while the output image may have different dimensions. Thus, simple methods such as scaling and cropping are not adequate for this purpose. In recent years, researchers have tried to improve the existing retargeting methods and introduce new ones. However, a specific method cannot be utilized to retarget all types of images. In other words, different images require different retargeting methods. Image retargeting has a close relationship to image saliency detection, which is relatively a new image processing task. Earlier saliency detection methods were based on local and global but low-level image information. These methods are called bottom-up methods. On the other hand, newer approaches are top-down and mixed methods that consider the high level and semantic information of the image too. In this paper, we introduce the proposed methods in both saliency detection and retargeting. For the saliency detection, the use of image context and semantic segmentation are examined, and a novel mixed bottom-up, and top-down saliency detection method is introduced. After saliency detection, a modified version of an existing retargeting method is utilized for retargeting the images. The results suggest that the proposed image retargeting pipeline has excellent performance compared to other tested methods. Also, the subjective evaluations on the Pascal dataset can be used as a retargeting quality assessment dataset for further research.
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