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Register a new userInterpretable Sequence Classification Via Prototype Trajectory
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Dat Hong
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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We propose a novel interpretable deep neural network for text classification, called ProtoryNet, based on a new concept of prototype trajectories. Motivated by the prototype theory in modern linguistics, ProtoryNet makes a prediction by finding the most similar prototype for each sentence in a text sequence and feeding an RNN backbone with the proximity of each sentence to the corresponding active prototype. The RNN backbone then captures the temporal pattern of the prototypes, which we refer to as prototype trajectories. Prototype trajectories enable intuitive and fine-grained interpretation of the reasoning process of the RNN model, in resemblance to how humans analyze texts. We also design a prototype pruning procedure to reduce the total number of prototypes used by the model for better interpretability. Experiments on multiple public data sets show that ProtoryNet is more accurate than the baseline prototype-based deep neural net and reduces the performance gap compared to state-of-the-art black-box models. In addition, after prototype pruning, the resulting ProtoryNet models only need less than or around 20 prototypes for all datasets, which significantly benefits interpretability. Furthermore, we report a survey result indicating that human users find ProtoryNet more intuitive and easier to understand than other prototype-based methods.
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Sequence classification is the task of predicting a class label given a sequence of observations. In many applications such as healthcare monitoring or intrusion detection, early classification is crucial to prompt intervention. In this work, we learn sequence classifiers that favour early classification from an evolving observation trace. While many state-of-the-art sequence classifiers are neural networks, and in particular LSTMs, our classifiers take the form of finite state automata and are learned via discrete optimization. Our automata-based classifiers are interpretable---supporting explanation, counterfactual reasoning, and human-in-the-loop modification---and have strong empirical performance. Experiments over a suite of goal recognition and behaviour classification datasets show our learned automata-based classifiers to have comparable test performance to LSTM-based classifiers, with the added advantage of being interpretable.
Feature attribution (FA), or the assignment of class-relevance to different locations in an image, is important for many classification problems but is particularly crucial within the neuroscience domain, where accurate mechanistic models of behaviours, or disease, require knowledge of all features discriminative of a trait. At the same time, predicting class relevance from brain images is challenging as phenotypes are typically heterogeneous, and changes occur against a background of significant natural variation. Here, we present a novel framework for creating class specific FA maps through image-to-image translation. We propose the use of a VAE-GAN to explicitly disentangle class relevance from background features for improved interpretability properties, which results in meaningful FA maps. We validate our method on 2D and 3D brain image datasets of dementia (ADNI dataset), ageing (UK Biobank), and (simulated) lesion detection. We show that FA maps generated by our method outperform baseline FA methods when validated against ground truth. More significantly, our approach is the first to use latent space sampling to support exploration of phenotype variation. Our code will be available online at https://github.com/CherBass/ICAM.
Autoregressive sequence models achieve state-of-the-art performance in domains like machine translation. However, due to the autoregressive factorization nature, these models suffer from heavy latency during inference. Recently, non-autoregressive sequence models were proposed to reduce the inference time. However, these models assume that the decoding process of each token is conditionally independent of others. Such a generation process sometimes makes the output sentence inconsistent, and thus the learned non-autoregressive models could only achieve inferior accuracy compared to their autoregressive counterparts. To improve then decoding consistency and reduce the inference cost at the same time, we propose to incorporate a structured inference module into the non-autoregressive models. Specifically, we design an efficient approximation for Conditional Random Fields (CRF) for non-autoregressive sequence models, and further propose a dynamic transition technique to model positional contexts in the CRF. Experiments in machine translation show that while increasing little latency (8~14ms), our model could achieve significantly better translation performance than previous non-autoregressive models on different translation datasets. In particular, for the WMT14 En-De dataset, our model obtains a BLEU score of 26.80, which largely outperforms the previous non-autoregressive baselines and is only 0.61 lower in BLEU than purely autoregressive models.
When analyzing the genome, researchers have discovered that proteins bind to DNA based on certain patterns of the DNA sequence known as motifs. However, it is difficult to manually construct motifs due to their complexity. Recently, externally learned memory models have proven to be effective methods for reasoning over inputs and supporting sets. In this work, we present memory matching networks (MMN) for classifying DNA sequences as protein binding sites. Our model learns a memory bank of encoded motifs, which are dynamic memory modules, and then matches a new test sequence to each of the motifs to classify the sequence as a binding or nonbinding site.
Self-training is one of the earliest and simplest semi-supervised methods. The key idea is to augment the original labeled dataset with unlabeled data paired with the models prediction (i.e. the pseudo-parallel data). While self-training has been extensively studied on classification problems, in complex sequence generation tasks (e.g. machine translation) it is still unclear how self-training works due to the compositionality of the target space. In this work, we first empirically show that self-training is able to decently improve the supervised baseline on neural sequence generation tasks. Through careful examination of the performance gains, we find that the perturbation on the hidden states (i.e. dropout) is critical for self-training to benefit from the pseudo-parallel data, which acts as a regularizer and forces the model to yield close predictions for similar unlabeled inputs. Such effect helps the model correct some incorrect predictions on unlabeled data. To further encourage this mechanism, we propose to inject noise to the input space, resulting in a noisy version of self-training. Empirical study on standard machine translation and text summarization benchmarks shows that noisy self-training is able to effectively utilize unlabeled data and improve the performance of the supervised baseline by a large margin.
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