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Register a new userMelanoma Diagnosis with Spatio-Temporal Feature Learning on Sequential Dermoscopic Images
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Added by
Zhen Yu
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Existing studies for automated melanoma diagnosis are based on single-time point images of lesions. However, melanocytic lesions de facto are progressively evolving and, moreover, benign lesions can progress into malignant melanoma. Ignoring cross-time morphological changes of lesions thus may lead to misdiagnosis in borderline cases. Based on the fact that dermatologists diagnose ambiguous skin lesions by evaluating the dermoscopic changes over time via follow-up examination, in this study, we propose an automated framework for melanoma diagnosis using sequential dermoscopic images. To capture the spatio-temporal characterization of dermoscopic evolution, we construct our model in a two-stream network architecture which capable of simultaneously learning appearance representations of individual lesions while performing temporal reasoning on both raw pixels difference and abstract features difference. We collect 184 cases of serial dermoscopic image data, which consists of histologically confirmed 92 benign lesions and 92 melanoma lesions, to evaluate the effectiveness of the proposed method. Our model achieved AUC of 74.34%, which is ~8% higher than that of only using single images and ~6% higher than the widely used sequence learning model based on LSTM.
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Human motion prediction is an increasingly interesting topic in computer vision and robotics. In this paper, we propose a new 2D CNN based network, TrajectoryNet, to predict future poses in the trajectory space. Compared with most existing methods, our model focuses on modeling the motion dynamics with coupled spatio-temporal features, local-global spatial features and global temporal co-occurrence features of the previous pose sequence. Specifically, the coupled spatio-temporal features describe the spatial and temporal structure information hidden in the natural human motion sequence, which can be mined by covering the space and time dimensions of the input pose sequence with the convolutional filters. The local-global spatial features that encode different correlations of different joints of the human body (e.g. strong correlations between joints of one limb, weak correlations between joints of different limbs) are captured hierarchically by enlarging the receptive field layer by layer and residual connections from the lower layers to the deeper layers in our proposed convolutional network. And the global temporal co-occurrence features represent the co-occurrence relationship that different subsequences in a complex motion sequence are appeared simultaneously, which can be obtained automatically with our proposed TrajectoryNet by reorganizing the temporal information as the depth dimension of the input tensor. Finally, future poses are approximated based on the captured motion dynamics features. Extensive experiments show that our method achieves state-of-the-art performance on three challenging benchmarks (e.g. Human3.6M, G3D, and FNTU), which demonstrates the effectiveness of our proposed method. The code will be available if the paper is accepted.
Vehicle re-identification (re-ID) aims to discover and match the target vehicles from a gallery image set taken by different cameras on a wide range of road networks. It is crucial for lots of applications such as security surveillance and traffic management. The remarkably similar appearances of distinct vehicles and the significant changes of viewpoints and illumination conditions take grand challenges to vehicle re-ID. Conventional solutions focus on designing global visual appearances without sufficient consideration of vehicles spatiotamporal relationships in different images. In this paper, we propose a novel discriminative feature representation with spatiotemporal clues (DFR-ST) for vehicle re-ID. It is capable of building robust features in the embedding space by involving appearance and spatio-temporal information. Based on this multi-modal information, the proposed DFR-ST constructs an appearance model for a multi-grained visual representation by a two-stream architecture and a spatio-temporal metric to provide complementary information. Experimental results on two public datasets demonstrate DFR-ST outperforms the state-of-the-art methods, which validate the effectiveness of the proposed method.
In this paper, we present a new tracking architecture with an encoder-decoder transformer as the key component. The encoder models the global spatio-temporal feature dependencies between target objects and search regions, while the decoder learns a query embedding to predict the spatial positions of the target objects. Our method casts object tracking as a direct bounding box prediction problem, without using any proposals or predefined anchors. With the encoder-decoder transformer, the prediction of objects just uses a simple fully-convolutional network, which estimates the corners of objects directly. The whole method is end-to-end, does not need any postprocessing steps such as cosine window and bounding box smoothing, thus largely simplifying existing tracking pipelines. The proposed tracker achieves state-of-the-art performance on five challenging short-term and long-term benchmarks, while running at real-time speed, being 6x faster than Siam R-CNN. Code and models are open-sourced at https://github.com/researchmm/Stark.
Functional connectivity (FC) between regions of the brain can be assessed by the degree of temporal correlation measured with functional neuroimaging modalities. Based on the fact that these connectivities build a network, graph-based approaches for analyzing the brain connectome have provided insights into the functions of the human brain. The development of graph neural networks (GNNs) capable of learning representation from graph structured data has led to increased interest in learning the graph representation of the brain connectome. Although recent attempts to apply GNN to the FC network have shown promising results, there is still a common limitation that they usually do not incorporate the dynamic characteristics of the FC network which fluctuates over time. In addition, a few studies that have attempted to use dynamic FC as an input for the GNN reported a reduction in performance compared to static FC methods, and did not provide temporal explainability. Here, we propose STAGIN, a method for learning dynamic graph representation of the brain connectome with spatio-temporal attention. Specifically, a temporal sequence of brain graphs is input to the STAGIN to obtain the dynamic graph representation, while novel READOUT functions and the Transformer encoder provide spatial and temporal explainability with attention, respectively. Experiments on the HCP-Rest and the HCP-Task datasets demonstrate exceptional performance of our proposed method. Analysis of the spatio-temporal attention also provide concurrent interpretation with the neuroscientific knowledge, which further validates our method. Code is available at https://github.com/egyptdj/stagin
The semantic segmentation of skin lesions is an important and common initial task in the computer aided diagnosis of dermoscopic images. Although deep learning-based approaches have considerably improved the segmentation accuracy, there is still room for improvement by addressing the major challenges, such as variations in lesion shape, size, color and varying levels of contrast. In this work, we propose the first deep semantic segmentation framework for dermoscopic images which incorporates, along with the original RGB images, information extracted using the physics of skin illumination and imaging. In particular, we incorporate information from specific color bands, illumination invariant grayscale images, and shading-attenuated images. We evaluate our method on three datasets: the ISBI ISIC 2017 Skin Lesion Segmentation Challenge dataset, the DermoFit Image Library, and the PH2 dataset and observe improvements of 12.02%, 4.30%, and 8.86% respectively in the mean Jaccard index over a baseline model trained only with RGB images.
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