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Optimal transport is a machine learning problem with applications including distribution comparison, feature selection, and generative adversarial networks. In this paper, we propose feature-robust optimal transport (FROT) for high-dimensional data, which solves high-dimensional OT problems using feature selection to avoid the curse of dimensionality. Specifically, we find a transport plan with discriminative features. To this end, we formulate the FROT problem as a min--max optimization problem. We then propose a convex formulation of the FROT problem and solve it using a Frank--Wolfe-based optimization algorithm, whereby the subproblem can be efficiently solved using the Sinkhorn algorithm. Since FROT finds the transport plan from selected features, it is robust to noise features. To show the effectiveness of FROT, we propose using the FROT algorithm for the layer selection problem in deep neural networks for semantic correspondence. By conducting synthetic and benchmark experiments, we demonstrate that the proposed method can find a strong correspondence by determining important layers. We show that the FROT algorithm achieves state-of-the-art performance in real-world semantic correspondence datasets.
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We introduce a new method of performing high dimensional discriminant analysis, which we call multiDA. We achieve this by constructing a hybrid model that seamlessly integrates a multiclass diagonal discriminant analysis model and feature selection components. Our feature selection component naturally simplifies to weights which are simple functions of likelihood ratio statistics allowing natural comparisons with traditional hypothesis testing methods. We provide heuristic arguments suggesting desirable asymptotic properties of our algorithm with regards to feature selection. We compare our method with several other approaches, showing marked improvements in regard to prediction accuracy, interpretability of chosen features, and algorithm run time. We demonstrate such strengths of our model by showing strong classification performance on publicly available high dimensional datasets, as well as through multiple simulation studies. We make an R package available implementing our approach.
Missing data is a crucial issue when applying machine learning algorithms to real-world datasets. Starting from the simple assumption that two batches extracted randomly from the same dataset should share the same distribution, we leverage optimal transport distances to quantify that criterion and turn it into a loss function to impute missing data values. We propose practical methods to minimize these losses using end-to-end learning, that can exploit or not parametric assumptions on the underlying distributions of values. We evaluate our methods on datasets from the UCI repository, in MCAR, MAR and MNAR settings. These experiments show that OT-based methods match or out-perform state-of-the-art imputation methods, even for high percentages of missing values.
We introduce a formulation of optimal transport problem for distributions on function spaces, where the stochastic map between functional domains can be partially represented in terms of an (infinite-dimensional) Hilbert-Schmidt operator mapping a Hilbert space of functions to another. For numerous machine learning tasks, data can be naturally viewed as samples drawn from spaces of functions, such as curves and surfaces, in high dimensions. Optimal transport for functional data analysis provides a useful framework of treatment for such domains. In this work, we develop an efficient algorithm for finding the stochastic transport map between functional domains and provide theoretical guarantees on the existence, uniqueness, and consistency of our estimate for the Hilbert-Schmidt operator. We validate our method on synthetic datasets and study the geometric properties of the transport map. Experiments on real-world datasets of robot arm trajectories further demonstrate the effectiveness of our method on applications in domain adaptation.
Feature selection is an important tool to deal with high dimensional data. In unsupervised case, many popular algorithms aim at maintaining the structure of the original data. In this paper, we propose a simple and effective feature selection algorithm to enhance sample similarity preservation through a new perspective, topology preservation, which is represented by persistent diagrams from the context of computational topology. This method is designed upon a unified feature selection framework called IVFS, which is inspired by random subset method. The scheme is flexible and can handle cases where the problem is analytically intractable. The proposed algorithm is able to well preserve the pairwise distances, as well as topological patterns, of the full data. We demonstrate that our algorithm can provide satisfactory performance under a sharp sub-sampling rate, which supports efficient implementation of our proposed method to large scale datasets. Extensive experiments validate the effectiveness of the proposed feature selection scheme.
We introduce COT-GAN, an adversarial algorithm to train implicit generative models optimized for producing sequential data. The loss function of this algorithm is formulated using ideas from Causal Optimal Transport (COT), which combines classic optimal transport methods with an additional temporal causality constraint. Remarkably, we find that this causality condition provides a natural framework to parameterize the cost function that is learned by the discriminator as a robust (worst-case) distance, and an ideal mechanism for learning time dependent data distributions. Following Genevay et al. (2018), we also include an entropic penalization term which allows for the use of the Sinkhorn algorithm when computing the optimal transport cost. Our experiments show effectiveness and stability of COT-GAN when generating both low- and high-dimensional time series data. The success of the algorithm also relies on a new, improved version of the Sinkhorn divergence which demonstrates less bias in learning.
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