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Register a new userInexpensive Domain Adaptation of Pretrained Language Models: Case Studies on Biomedical NER and Covid-19 QA
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Added by
Nina Poerner
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Domain adaptation of Pretrained Language Models (PTLMs) is typically achieved by unsupervised pretraining on target-domain text. While successful, this approach is expensive in terms of hardware, runtime and CO_2 emissions. Here, we propose a cheaper alternative: We train Word2Vec on target-domain text and align the resulting word vectors with the wordpiece vectors of a general-domain PTLM. We evaluate on eight biomedical Named Entity Recognition (NER) tasks and compare against the recently proposed BioBERT model. We cover over 60% of the BioBERT-BERT F1 delta, at 5% of BioBERTs CO_2 footprint and 2% of its cloud compute cost. We also show how to quickly adapt an existing general-domain Question Answering (QA) model to an emerging domain: the Covid-19 pandemic.
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Pretrained language models have shown success in many natural language processing tasks. Many works explore incorporating knowledge into language models. In the biomedical domain, experts have taken decades of effort on building large-scale knowledge bases. For example, the Unified Medical Language System (UMLS) contains millions of entities with their synonyms and defines hundreds of relations among entities. Leveraging this knowledge can benefit a variety of downstream tasks such as named entity recognition and relation extraction. To this end, we propose KeBioLM, a biomedical pretrained language model that explicitly leverages knowledge from the UMLS knowledge bases. Specifically, we extract entities from PubMed abstracts and link them to UMLS. We then train a knowledge-aware language model that firstly applies a text-only encoding layer to learn entity representation and applies a text-entity fusion encoding to aggregate entity representation. Besides, we add two training objectives as entity detection and entity linking. Experiments on the named entity recognition and relation extraction from the BLURB benchmark demonstrate the effectiveness of our approach. Further analysis on a collected probing dataset shows that our model has better ability to model medical knowledge.
Recent research indicates that pretraining cross-lingual language models on large-scale unlabeled texts yields significant performance improvements over various cross-lingual and low-resource tasks. Through training on one hundred languages and terabytes of texts, cross-lingual language models have proven to be effective in leveraging high-resource languages to enhance low-resource language processing and outperform monolingual models. In this paper, we further investigate the cross-lingual and cross-domain (CLCD) setting when a pretrained cross-lingual language model needs to adapt to new domains. Specifically, we propose a novel unsupervised feature decomposition method that can automatically extract domain-specific features and domain-invariant features from the entangled pretrained cross-lingual representations, given unlabeled raw texts in the source language. Our proposed model leverages mutual information estimation to decompose the representations computed by a cross-lingual model into domain-invariant and domain-specific parts. Experimental results show that our proposed method achieves significant performance improvements over the state-of-the-art pretrained cross-lingual language model in the CLCD setting. The source code of this paper is publicly available at https://github.com/lijuntaopku/UFD.
The notion of in-domain data in NLP is often over-simplistic and vague, as textual data varies in many nuanced linguistic aspects such as topic, style or level of formality. In addition, domain labels are many times unavailable, making it challenging to build domain-specific systems. We show that massive pre-trained language models implicitly learn sentence representations that cluster by domains without supervision -- suggesting a simple data-driven definition of domains in textual data. We harness this property and propose domain data selection methods based on such models, which require only a small set of in-domain monolingual data. We evaluate our data selection methods for neural machine translation across five diverse domains, where they outperform an established approach as measured by both BLEU and by precision and recall of sentence selection with respect to an oracle.
The massive growth of digital biomedical data is making biomedical text indexing and classification increasingly important. Accordingly, previous research has devised numerous deep learning techniques focused on using feedforward, convolutional or recurrent neural architectures. More recently, fine-tuned transformers-based pretrained models (PTMs) have demonstrated superior performance compared to such models in many natural language processing tasks. However, the direct use of PTMs in the biomedical domain is only limited to the target documents, ignoring the rich semantic information in the label descriptions. In this paper, we develop an improved label attention-based architecture to inject semantic label description into the fine-tuning process of PTMs. Results on two public medical datasets show that the proposed fine-tuning scheme outperforms the conventionally fine-tuned PTMs and prior state-of-the-art models. Furthermore, we show that fine-tuning with the label attention mechanism is interpretable in the interpretability study.
This study tackles unsupervised domain adaptation of reading comprehension (UDARC). Reading comprehension (RC) is a task to learn the capability for question answering with textual sources. State-of-the-art models on RC still do not have general linguistic intelligence; i.e., their accuracy worsens for out-domain datasets that are not used in the training. We hypothesize that this discrepancy is caused by a lack of the language modeling (LM) capability for the out-domain. The UDARC task allows models to use supervised RC training data in the source domain and only unlabeled passages in the target domain. To solve the UDARC problem, we provide two domain adaptation models. The first one learns the out-domain LM and in-domain RC task sequentially. The second one is the proposed model that uses a multi-task learning approach of LM and RC. The models can retain both the RC capability acquired from the supervised data in the source domain and the LM capability from the unlabeled data in the target domain. We evaluated the models on UDARC with five datasets in different domains. The models outperformed the model without domain adaptation. In particular, the proposed model yielded an improvement of 4.3/4.2 points in EM/F1 in an unseen biomedical domain.
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