Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userNon-equilibrium phase separation with reactions: A canonical model and its behaviour
75
0
0.0
(
0
)
Ask ChatGPT about the research
No Arabic abstract
Materials undergoing both phase separation and chemical reactions (defined here as all processes that change particle type or number) form an important class of non-equilibrium systems. Examples range from suspensions of self-propelled bacteria with birth-death dynamics, to bio-molecular condensates, or membraneless organelles, within cells. In contrast to their passive counterparts, such systems have conserved and non-conserved dynamics that do not, in general, derive from a shared free energy. This mismatch breaks time-reversal symmetry and leads to new types of dynamical competition that are absent in or near equilibrium. We construct a canonical scalar field theory to describe such systems, with conserved and non-conserved dynamics obeying Model B and Model A respectively (in the Hohenberg-Halperin classification), chosen such that the two free energies involved are incompatible. The resulting minimal model is shown to capture the various phenomenologies reported previously for more complicated models with the same physical ingredients, including microphase separation, limit cycles and droplet splitting. We find a low-dimensional subspace of parameters for which time-reversal symmetry is accidentally recovered, and show that here the dynamics of the order parameter field (but not its conserved current) is exactly the same as an equilibrium system in which microphase separation is caused by long-range attractive interactions.
rate research
Read More
Biological activity gives rise to non-equilibrium fluctuations in the cytoplasm of cells; however, there are few methods to directly measure these fluctuations. Using a reconstituted actin cytoskeleton, we show that the bending dynamics of embedded microtubules can be used to probe local stress fluctuations. We add myosin motors that drive the network out of equilibrium, resulting in an increased amplitude and modified time-dependence of microtubule bending fluctuations. We show that this behavior results from step-like forces on the order of 10 pN driven by collective motor dynamics.
We report the observation of the homogenous nucleation of crystals in a dense layer of steel spheres confined between two horizontal plates vibrated vertically. Above a critical vibration amplitude, two-layer crystals with square symmetry were found to coexist in steady state with a surrounding granular liquid. By analogy to equilibrium hard sphere systems, the phase behavior can be explained through entropy maximization. However, dramatic non-equilibrium effects are present, including a significant difference in the granular temperatures of the two phases.
We report that binary dispersions of like-charged colloidal particles with large charge asymmetry but similar size exhibit phase separation into crystal and fluid phases under very low salt conditions. This is unexpected because the effective colloid-colloid pair interactions are accurately described by a Yukawa model which is stable to demixing. We show that colloid-ion interactions provide an energetic driving force for phase separation, which is initiated by crystallization of one species.
Non-equilibrium aspects of the BCS model have fascinated physicists for decades, from the seminal works of Eliashberg to modern realizations in cold atom experiments. The latter scenarios have lead to a great deal of interest in the quench dynamics of fermions with pairing interactions. The recently introduced notion of a dynamical quantum phase transition is an attempt to classify the myriad of possible phenomena which can result in such far from equilibrium systems. These are defined as non-analytic points of the logarithm of the Loschmidt echo and are linked to oscillations in the dynamics a systems order parameter. In this work we analytically investigate the relation between DQPTs and oscillation of the superconducting order parameter in quenches of the BCS model. We find that each oscillation of the order parameter is accompanied by a DQPT which is first order in nature. We show this for a variety of initial states and furthermore find that when the order parameter attains a constant steady state then no DQPTS occur.
The phase-separation occurring in a system of mutually interacting proteins that can bind on specific sites of a chromatin fiber is here investigated. This is achieved by means of extensive Molecular Dynamics simulations of a simple polymer model which includes regulatory proteins as interacting spherical particles. Our interest is particularly focused on the role played by phase-separation in the formation of molecule aggregates that can join distant regulatory elements, such as gene promoters and enhancers, along the DNA. We find that the overall equilibrium state of the system resulting from the mutual interplay between binding molecules and chromatin can lead, under suitable conditions that depend on molecules concentration, molecule-molecule and molecule-DNA interactions, to the formation of phase-separated molecular clusters allowing robust contacts between regulatory sites. Vice-versa, the presence of regulatory sites can promote the phase-separation process. Different dynamical regimes can generate the enhancer-promoter contact, either by cluster nucleation at binding sites or by bulk spontaneous formation of the mediating cluster to which binding sites are successively attracted. The possibility that such processes can explain experimental live-cell imaging data measuring distances between regulatory sites during time is also discussed.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
