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Register a new userA kernel log-rank test of independence for right-censored data
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Added by
Tamara Fernandez
Publication date
2019
fields
Mathematical Statistics
and research's language is
English
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We introduce a general non-parametric independence test between right-censored survival times and covariates, which may be multivariate. Our test statistic has a dual interpretation, first in terms of the supremum of a potentially infinite collection of weight-indexed log-rank tests, with weight functions belonging to a reproducing kernel Hilbert space (RKHS) of functions; and second, as the norm of the difference of embeddings of certain finite measures into the RKHS, similar to the Hilbert-Schmidt Independence Criterion (HSIC) test-statistic. We study the asymptotic properties of the test, finding sufficient conditions to ensure our test correctly rejects the null hypothesis under any alternative. The test statistic can be computed straightforwardly, and the rejection threshold is obtained via an asymptotically consistent Wild Bootstrap procedure. Extensive simulations demonstrate that our testing procedure generally performs better than competing approaches in detecting complex non-linear dependence.
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We consider settings in which the data of interest correspond to pairs of ordered times, e.g, the birth times of the first and second child, the times at which a new user creates an account and makes the first purchase on a website, and the entry and survival times of patients in a clinical trial. In these settings, the two times are not independent (the second occurs after the first), yet it is still of interest to determine whether there exists significant dependence {em beyond} their ordering in time. We refer to this notion as quasi-(in)dependence. For instance, in a clinical trial, to avoid biased selection, we might wish to verify that recruitment times are quasi-independent of survival times, where dependencies might arise due to seasonal effects. In this paper, we propose a nonparametric statistical test of quasi-independence. Our test considers a potentially infinite space of alternatives, making it suitable for complex data where the nature of the possible quasi-dependence is not known in advance. Standard parametric approaches are recovered as special cases, such as the classical conditional Kendalls tau, and log-rank tests. The tests apply in the right-censored setting: an essential feature in clinical trials, where patients can withdraw from the study. We provide an asymptotic analysis of our test-statistic, and demonstrate in experiments that our test obtains better power than existing approaches, while being more computationally efficient.
Weighted log-rank tests are arguably the most widely used tests by practitioners for the two-sample problem in the context of right-censored data. Many approaches have been considered to make weighted log-rank tests more robust against a broader family of alternatives, among them, considering linear combinations of weighted log-rank tests, and taking the maximum among a finite collection of them. In this paper, we propose as test statistic the supremum of a collection of (potentially infinite) weight-indexed log-rank tests where the index space is the unit ball in a reproducing kernel Hilbert space (RKHS). By using some desirable properties of RKHSs we provide an exact and simple evaluation of the test statistic and establish connections with previous tests in the literature. Additionally, we show that for a special family of RKHSs, the proposed test is omnibus. We finalise by performing an empirical evaluation of the proposed methodology and show an application to a real data scenario. Our theoretical results are proved using techniques for double integrals with respect to martingales that may be of independent interest.
We introduce a kernel-based goodness-of-fit test for censored data, where observations may be missing in random time intervals: a common occurrence in clinical trials and industrial life-testing. The test statistic is straightforward to compute, as is the test threshold, and we establish consistency under the null. Unlike earlier approaches such as the Log-rank test, we make no assumptions as to how the data distribution might differ from the null, and our test has power against a very rich class of alternatives. In experiments, our test outperforms competing approaches for periodic and Weibull hazard functions (where risks are time dependent), and does not show the failure modes of tests that rely on user-defined features. Moreover, in cases where classical tests are provably most powerful, our test performs almost as well, while being more general.
Forest-based methods have recently gained in popularity for non-parametric treatment effect estimation. Building on this line of work, we introduce causal survival forests, which can be used to estimate heterogeneous treatment effects in a survival and observational setting where outcomes may be right-censored. Our approach relies on orthogonal estimating equations to robustly adjust for both censoring and selection effects. In our experiments, we find our approach to perform well relative to a number of baselines.
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