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Register a new userCompressed Sensing Microscopy with Scanning Line Probes
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In applications of scanning probe microscopy, images are acquired by raster scanning a point probe across a sample. Viewed from the perspective of compressed sensing (CS), this pointwise sampling scheme is inefficient, especially when the target image is structured. While replacing point measurements with delocalized, incoherent measurements has the potential to yield order-of-magnitude improvements in scan time, implementing the delocalized measurements of CS theory is challenging. In this paper we study a partially delocalized probe construction, in which the point probe is replaced with a continuous line, creating a sensor which essentially acquires line integrals of the target image. We show through simulations, rudimentary theoretical analysis, and experiments, that these line measurements can image sparse samples far more efficiently than traditional point measurements, provided the local features in the sample are enough separated. Despite this promise, practical reconstruction from line measurements poses additional difficulties: the measurements are partially coherent, and real measurements exhibit nonidealities. We show how to overcome these limitations using natural strategies (reweighting to cope with coherence, blind calibration for nonidealities), culminating in an end-to-end demonstration.
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Compressed sensing fluorescence microscopy (CS-FM) proposes a scheme whereby less measurements are collected during sensing and reconstruction is performed to recover the image. Much work has gone into optimizing the sensing and reconstruction portions separately. We propose a method of jointly optimizing both sensing and reconstruction end-to-end under a total measurement constraint, enabling learning of the optimal sensing scheme concurrently with the parameters of a neural network-based reconstruction network. We train our model on a rich dataset of confocal, two-photon, and wide-field microscopy images comprising of a variety of biological samples. We show that our method outperforms several baseline sensing schemes and a regularized regression reconstruction algorithm.
Reconstructing under-sampled k-space measurements in Compressed Sensing MRI (CS-MRI) is classically solved with regularized least-squares. Recently, deep learning has been used to amortize this optimization by training reconstruction networks on a dataset of under-sampled measurements. Here, a crucial design choice is the regularization function(s) and corresponding weight(s). In this paper, we explore a novel strategy of using a hypernetwork to generate the parameters of a separate reconstruction network as a function of the regularization weight(s), resulting in a regularization-agnostic reconstruction model. At test time, for a given under-sampled image, our model can rapidly compute reconstructions with different amounts of regularization. We analyze the variability of these reconstructions, especially in situations when the overall quality is similar. Finally, we propose and empirically demonstrate an efficient and data-driven way of maximizing reconstruction performance given limited hypernetwork capacity. Our code is publicly available at https://github.com/alanqrwang/RegAgnosticCSMRI.
Compressed sensing (CS) is a signal processing framework for efficiently reconstructing a signal from a small number of measurements, obtained by linear projections of the signal. In this paper we present an end-to-end deep learning approach for CS, in which a fully-connected network performs both the linear sensing and non-linear reconstruction stages. During the training phase, the sensing matrix and the non-linear reconstruction operator are jointly optimized using Structural similarity index (SSIM) as loss rather than the standard Mean Squared Error (MSE) loss. We compare the proposed approach with state-of-the-art in terms of reconstruction quality under both losses, i.e. SSIM score and MSE score.
To reduce the storage requirements, remote sensing (RS) images are usually stored in compressed format. Existing scene classification approaches using deep neural networks (DNNs) require to fully decompress the images, which is a computationally demanding task in operational applications. To address this issue, in this paper we propose a novel approach to achieve scene classification in JPEG 2000 compressed RS images. The proposed approach consists of two main steps: i) approximation of the finer resolution sub-bands of reversible biorthogonal wavelet filters used in JPEG 2000; and ii) characterization of the high-level semantic content of approximated wavelet sub-bands and scene classification based on the learnt descriptors. This is achieved by taking codestreams associated with the coarsest resolution wavelet sub-band as input to approximate finer resolution sub-bands using a number of transposed convolutional layers. Then, a series of convolutional layers models the high-level semantic content of the approximated wavelet sub-band. Thus, the proposed approach models the multiresolution paradigm given in the JPEG 2000 compression algorithm in an end-to-end trainable unified neural network. In the classification stage, the proposed approach takes only the coarsest resolution wavelet sub-bands as input, thereby reducing the time required to apply decoding. Experimental results performed on two benchmark aerial image archives demonstrate that the proposed approach significantly reduces the computational time with similar classification accuracies when compared to traditional RS scene classification approaches (which requires full image decompression).
Recent works have demonstrated that deep learning (DL) based compressed sensing (CS) implementation can accelerate Magnetic Resonance (MR) Imaging by reconstructing MR images from sub-sampled k-space data. However, network architectures adopted in previous methods are all designed by handcraft. Neural Architecture Search (NAS) algorithms can automatically build neural network architectures which have outperformed human designed ones in several vision tasks. Inspired by this, here we proposed a novel and efficient network for the MR image reconstruction problem via NAS instead of manual attempts. Particularly, a specific cell structure, which was integrated into the model-driven MR reconstruction pipeline, was automatically searched from a flexible pre-defined operation search space in a differentiable manner. Experimental results show that our searched network can produce better reconstruction results compared to previous state-of-the-art methods in terms of PSNR and SSIM with 4-6 times fewer computation resources. Extensive experiments were conducted to analyze how hyper-parameters affect reconstruction performance and the searched structures. The generalizability of the searched architecture was also evaluated on different organ MR datasets. Our proposed method can reach a better trade-off between computation cost and reconstruction performance for MR reconstruction problem with good generalizability and offer insights to design neural networks for other medical image applications. The evaluation code will be available at https://github.com/yjump/NAS-for-CSMRI.
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